RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MINDY1Q8N5J2 469 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 OR4M2Q8NGB6 313 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 SDHCQ99643 169 aaPredicted RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 TRIM62Q9BVG3 475 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 POMKQ9H5K3 350 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 KAT8Q9H7Z6 458 aaKnown RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 CYP4F12Q9HCS2 524 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 ERVK13-1Q9NX77 482 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 ATPIF1Q9UII2 106 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 NEU3Q9UQ49 428 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 PCDHGB1Q9Y5G3 927 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 PCDHA9Q9Y5H5 950 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 MEIOCA2RUB1 952 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 HMX3A6NHT5 357 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 PRMT5O14744 637 aaPredicted RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 TNFRSF10BO14763 440 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 TSPAN4O14817 238 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 ANGPT2O15123 496 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 SLC35E2BP0CK96 405 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 NFKB1P19838 968 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 CLK1P49759 484 aaKnown RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 LIPEQ05469 1076 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 PPP1R8Q12972 351 aaKnown RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 TOP3AQ13472 1001 aaPredicted RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 TRIP4Q15650 581 aaPredicted RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 CYHR1Q6ZMK1 362 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 MICU2Q8IYU8 434 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 DACT3Q96B18 629 aaPredicted RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 PYCR2Q96C36 320 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 ELAC1Q9H777 363 aaKnown RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 ABCC13Q9NSE7 274 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 FBXO10Q9UK96 956 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 TBX21Q9UL17 535 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 TMPRSS11EQ9UL52 423 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 AP2A1O95782 977 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 CXCL10P02778 98 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 TGFBR2P37173 567 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 USP10Q14694 798 aaKnown RBP13.02□□□□□ -0.32
CLK3-206ENST00000562078 GPAT3Q53EU6 434 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 SPANXN3Q5MJ09 141 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 IL31Q6EBC2 164 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 PRMT9Q6P2P2 845 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 EFL1Q7Z2Z2 1120 aaKnown RBP13.02□□□□□ -0.32
CLK3-206ENST00000562078 NECAB2Q7Z6G3 386 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 SCD5Q86SK9 330 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 RAB43Q86YS6 212 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 RIMKLAQ8IXN7 391 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 DEDD2Q8WXF8 326 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 TMEM125Q96AQ2 219 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 TMEM80Q96HE8 168 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 TMEM74Q96NL1 305 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 APOL2Q9BQE5 337 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 NMUR1Q9HB89 426 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 DIABLOQ9NR28 239 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 GLTPQ9NZD2 209 aa13.02□□□□□ -0.32
CLK3-206ENST00000562078 AGO1Q9UL18 857 aaKnown RBP13.02□□□□□ -0.32
CLK3-206ENST00000562078 OR6C70A6NIJ9 312 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 G3V2T6 193 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 DFFAO00273 331 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 DSCR3O14972 297 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 NPHS1O60500 1241 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 PAGE1O75459 146 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 MOCS2O96007 188 aaPredicted RBP13.02□□□□□ -0.33
CLK3-206ENST00000562078 HRH2P25021 359 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 SOX9P48436 509 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 GPR15P49685 360 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 GATMP50440 423 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 PRKCDQ05655 676 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 CDK5R2Q13319 367 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 EFR3AQ14156 821 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 IRF3Q14653 427 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 SYT16Q17RD7 645 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 CUZD1Q86UP6 607 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 DNAAF3Q8N9W5 541 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 LHFPL5Q8TAF8 219 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 SLC7A6Q92536 515 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 C3orf30Q96M34 536 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 UQCC2Q9BRT2 126 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 MLPHQ9BV36 600 aaPredicted RBP13.02□□□□□ -0.33
CLK3-206ENST00000562078 CDADC1Q9BWV3 514 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 UBP1Q9NZI7 540 aa13.02□□□□□ -0.33
CLK3-206ENST00000562078 ZCWPW2A0A1B0GU75 182 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 LOC100130705A0A1B0GUX0 176 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 LINC00854A0A1B0GVQ3 168 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.01□□□□□ -0.33
CLK3-206ENST00000562078 A0A1W2PQH9 124 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 MED26O95402 600 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 JCHAINP01591 159 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 MT-ND2P03891 347 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 PDGFAP04085 211 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 LCKP06239 509 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 UMPSP11172 480 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 TSPAN8P19075 237 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 MTHFRP42898 656 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 SLC15A1P46059 708 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 RFX2P48378 723 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 MAPK12P53778 367 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 IL5RAQ01344 420 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 ARHGAP36Q6ZRI8 547 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 ZDHHC13Q8IUH4 622 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms