RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SRSF11Q05519 484 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 HTR4Q13639 388 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 GRIN2CQ14957 1233 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 CYP2A13Q16696 494 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 AP5B1Q2VPB7 878 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PUS10Q3MIT2 529 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 HABP4Q5JVS0 413 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 C6orf136Q5SQH8 315 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PIP5KL1Q5T9C9 394 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 FAM109BQ6ICB4 259 aaPredicted RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 LETMD1Q6P1Q0 360 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PNCKQ6P2M8 343 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 TMEM220Q6QAJ8 160 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 R3HCC1LQ7Z5L2 792 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 PDZD3Q86UT5 571 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 MMAAQ8IVH4 418 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 TBC1D21Q8IYX1 336 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 RGL4Q8IZJ4 473 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 EFCAB3Q8N7B9 438 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 RASGEF1AQ8N9B8 481 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 OR9A1PQ8NGU1 263 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 OR56A3Q8NH54 315 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 SELENOMQ8WWX9 145 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 SORCS1Q8WY21 1168 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 SCAMP4Q969E2 229 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 ZUFSPQ96AP4 578 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 ARRDC3Q96B67 414 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 TESCQ96BS2 214 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 FAM136AQ96C01 138 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 RSPRY1Q96DX4 576 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 WDR34Q96EX3 536 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 DUS3LQ96G46 650 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 QRFPRQ96P65 431 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 LRRC3BQ96PB8 259 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 TMEM79Q9BSE2 394 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 TEX101Q9BY14 249 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 UNKQ9C0B0 810 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 ZNF576Q9H609 170 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 CCDC177Q9NQR7 707 aaPredicted RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 ATAD3AQ9NVI7 634 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 SIRT5Q9NXA8 310 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 AHSPQ9NZD4 102 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 ADA2Q9NZK5 511 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 TMEM181Q9P2C4 612 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 GALPQ9UBC7 116 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 MAGEL2Q9UJ55 1249 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 CD207Q9UJ71 328 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 CNOT11Q9UKZ1 510 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 ZNF490Q9ULM2 529 aaPredicted RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 PSMD13Q9UNM6 376 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 MRPS17Q9Y2R5 130 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 C15orf41Q9Y2V0 281 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PCDHGA2Q9Y5H1 932 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PRSS21Q9Y6M0 314 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 A8MX80 341 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 MANBAO00462 879 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 NR5A2O00482 541 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 NVLO15381 856 aaKnown RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 PCDH8O95206 1070 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 KCNH1O95259 989 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 ANP32DO95626 131 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 F7P08709 466 aaPredicted RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 LINC00032P0C843 101 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 ITGB6P18564 788 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 PSMA4P25789 261 aaKnown RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 VARSP26640 1264 aaKnown RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 CTHP32929 405 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 TRIM23P36406 574 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 HPCAL1P37235 193 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 PBX2P40425 430 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 PIK3CBP42338 1070 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 MAGEA8P43361 318 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 KIR2DL1P43626 348 aaPredicted RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 RXRGP48443 463 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 AGTR2P50052 363 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 CLCNKAP51800 687 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 KIAA1024LP59773 190 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 CDK3Q00526 305 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 SMAD4Q13485 552 aaKnown RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 NFYCQ13952 458 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 LRRC32Q14392 662 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 PHKG1Q16816 387 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 PTCHD3Q3KNS1 767 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 LRIT3Q3SXY7 679 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 AGBL4Q5VU57 503 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 TMEM198Q66K66 360 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 C8orf82Q6P1X6 216 aaPredicted RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 MED27Q6P2C8 311 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 AGTRAPQ6RW13 159 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 LRRC74BQ6ZQY2 392 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 IKBIPQ70UQ0 350 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 PAGE2Q7Z2X7 111 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 DHDDSQ86SQ9 333 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 TRIM69Q86WT6 500 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 HID1Q8IV36 788 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 TMEM132CQ8N3T6 1108 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 HDDC3Q8N4P3 179 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 POU5F2Q8N7G0 328 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 OR52E4Q8NGH9 312 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 SLC26A7Q8TE54 656 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms