RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 FOXM1Q08050 763 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 SMU1Q2TAY7 513 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 PSRC1Q6PGN9 363 aaPredicted RBP12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 LINGO4Q6UY18 593 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 MBOAT1Q6ZNC8 495 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 TUBA1AQ71U36 451 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 ZNF572Q7Z3I7 529 aaPredicted RBP12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 ADGRD2Q7Z7M1 963 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 LMLNQ96KR4 655 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 EBPLQ9BY08 206 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 OXSMQ9NWU1 459 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 SPATA7Q9P0W8 599 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 DCCP43146 1447 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 GPR25O00155 361 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 CDC40O60508 579 aaKnown RBP eCLIP12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 SELPP16109 830 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 CPN2P22792 545 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 ATP5A1P25705 553 aaKnown RBP12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 PDCD4Q53EL6 469 aaKnown RBP12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 CYP2U1Q7Z449 544 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 FUBP3Q96I24 572 aaKnown RBP eCLIP12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 HAPLN3Q96S86 360 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 ZIM2Q9NZV7 527 aa12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 MAFBQ9Y5Q3 323 aaPredicted RBP12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 ZFP37Q9Y6Q3 630 aaPredicted RBP12.96□□□□□ -0.33
CSPG4P11-201ENST00000560634 A0A0G2JPF8 293 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 HNRNPCL3B7ZW38 293 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 TLL1O43897 1013 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 SNAPC5O75971 98 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 OR4Q2P0C623 313 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 HNRNPCL4P0DMR1 293 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 DNAJB1P25685 340 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 PDHA2P29803 388 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 MPIP34949 423 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 PSMD8P48556 350 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 DSC3Q14574 896 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 NPTX1Q15818 432 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 FAM110CQ1W6H9 321 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 CAND1Q86VP6 1230 aaKnown RBP12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 SIDT2Q8NBJ9 832 aaKnown RBP12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 SLC35B2Q8TB61 432 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 TFAP2BQ92481 460 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 PCED1BQ96HM7 432 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 ZNF599Q96NL3 588 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 IKZF4Q9H2S9 585 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 EIF3KQ9UBQ5 218 aaKnown RBP12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 COPS7AQ9UBW8 275 aa12.96□□□□□ -0.34
CSPG4P11-201ENST00000560634 PCP4L1A6NKN8 68 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 ZNF208O43345 1280 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 B3GALT2O43825 422 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 FOXN2P32314 431 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 CLCN7P51798 805 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 TRMT10BQ6PF06 316 aaKnown RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 LBX2Q6XYB7 198 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 ARMC10Q8N2F6 343 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 TMIEQ8NEW7 156 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 C1orf216Q8TAB5 229 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 SMG7Q92540 1137 aaKnown RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 NDRG1Q92597 394 aaKnown RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PSMG2Q969U7 264 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 POFUT2Q9Y2G5 429 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PTPRJQ12913 1337 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 CCL22O00626 93 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 ALAS2P22557 587 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 SLC1A2P43004 574 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 NDUFV1P49821 464 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PYROXD2Q8N2H3 581 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 OR14C36Q8NHC7 312 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 AIFM2Q9BRQ8 373 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 NTPCRQ9BSD7 190 aaKnown RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 ZCCHC3Q9NUD5 404 aaKnown RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 FNIP2Q9P278 1114 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PTBP2Q9UKA9 531 aaKnown RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 MKLN1Q9UL63 735 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 A0A075B6Q4 140 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 H0YJX3 145 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 NOBOXO60393 691 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 YES1P07947 543 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 SLC2A2P11168 524 aaPredicted RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PSKH1P11801 424 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 UNGP13051 313 aaPredicted RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 CHRNB2P17787 502 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 WSCD2Q2TBF2 565 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 FBXO48Q5FWF7 155 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 SNAP47Q5SQN1 464 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PDE12Q6L8Q7 609 aaKnown RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 SMARCD3Q6STE5 483 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 INO80EQ8NBZ0 244 aaPredicted RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 KLRG1Q96E93 195 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 ZC3H10Q96K80 434 aaKnown RBP12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PSKH2Q96QS6 385 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 SLC39A3Q9BRY0 314 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 FLRT1Q9NZU1 646 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 FZD1Q9UP38 647 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PRKAB1Q9Y478 270 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 TOR1BO14657 336 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 PCDH7O60245 1069 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 ATP6V1G1O75348 118 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 ARL6IP5O75915 188 aa12.95□□□□□ -0.34
CSPG4P11-201ENST00000560634 CSNK2A2P19784 350 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms