RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PHC1P78364 1004 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 LIN52Q52LA3 116 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 THEMIS2Q5TEJ8 643 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 C10orf111Q8N326 155 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 DTWD1Q8N5C7 304 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 RASGEF1AQ8N9B8 481 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 CDC26Q8NHZ8 85 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 SLC13A3Q8WWT9 602 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 FIG4Q92562 907 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 ZUFSPQ96AP4 578 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 APIPQ96GX9 242 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 MTERF1Q99551 399 aaKnown RBP10.36□□□□□ -0.75
CUX1-217ENST00000558836 TSC22D3Q99576 134 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 SLC12A9Q9BXP2 914 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 HPS4Q9NQG7 708 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 TBC1D14Q9P2M4 693 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.36□□□□□ -0.75
CUX1-217ENST00000558836 HELZP42694 1942 aaKnown RBP10.36□□□□□ -0.75
CUX1-217ENST00000558836 CAPNS1P04632 268 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 PGRP06401 933 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 ELFN1P0C7U0 828 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 SMIM18P0DKX4 95 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 PPP1R8Q12972 351 aaKnown RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 BNIP2Q12982 314 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 GRM2Q14416 872 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 KIAA0040Q15053 153 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 MAPKAPK3Q16644 382 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 COQ5Q5HYK3 327 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 PARS2Q7L3T8 475 aaKnown RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 TMEM126BQ8IUX1 230 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 FAM86B1Q8N7N1 296 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 ZNF707Q96C28 371 aaPredicted RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 AP2M1Q96CW1 435 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 APOLD1Q96LR9 279 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 GRIP2Q9C0E4 1043 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 RDH14Q9HBH5 336 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 ARMC1Q9NVT9 282 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 NEUROG3Q9Y4Z2 214 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 MAGED1Q9Y5V3 778 aaPredicted RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 TCF20Q9UGU0 1960 aaKnown RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 DOCK9Q9BZ29 2069 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 ZNF106Q9H2Y7 1883 aaKnown RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 F5P12259 2224 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 TCRBV5S2A0A599 114 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 PABPN1LA6NDY0 278 aaKnown RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 AQP12BA6NM10 295 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 XYLBO75191 536 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 FASP25445 335 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 BDKRB1P46663 353 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 CHIT1Q13231 466 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 PGS1Q32NB8 556 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 AQP12AQ8IXF9 295 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 RAVER1Q8IY67 606 aaKnown RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 TSPEARQ8WU66 669 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 GTF2H4Q92759 462 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 ZNF597Q96LX8 424 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 OR52E6Q96RD3 313 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 AGPAT4Q9NRZ5 378 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 C1orf109Q9NX04 203 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 SLC25A37Q9NYZ2 338 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 UTS2RQ9UKP6 389 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 IFRD1O00458 451 aaPredicted RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 ENO2P09104 434 aaPredicted RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 FAM58BPP0C7Q3 252 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 CYP2A6P11509 494 aaPredicted RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 ADH5P11766 374 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 JAK1P23458 1154 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 FOXM1Q08050 763 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 PPIGQ13427 754 aaKnown RBP eCLIP10.35□□□□□ -0.759e-7■■■□□ 18.7
CUX1-217ENST00000558836 ZNF805Q5CZA5 627 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 OTUD3Q5T2D3 398 aaPredicted RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 CACHD1Q5VU97 1274 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 TMEM214Q6NUQ4 689 aaKnown RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 TMEM220Q6QAJ8 160 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 GCNT7Q6ZNI0 430 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 TRIM46Q7Z4K8 759 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 C7orf61Q8IZ16 206 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 MCOLN3Q8TDD5 553 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 USP7Q93009 1102 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 ARMC5Q96C12 935 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 VPS50Q96JG6 964 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 UHRF1Q96T88 793 aaPredicted RBP10.35□□□□□ -0.75
CUX1-217ENST00000558836 ZBTB18Q99592 522 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 INPP5KQ9BT40 448 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 TMEM106CQ9BVX2 250 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 TRIM15Q9C019 465 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 CAAP1Q9H8G2 361 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 TRPS1Q9UHF7 1281 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 PRKAB1Q9Y478 270 aa10.35□□□□□ -0.75
CUX1-217ENST00000558836 CARNS1A5YM72 827 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 ARHGEF33A8MVX0 844 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 SLC28A1O00337 649 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 NUAK1O60285 661 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 KCNH1O95259 989 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CLPTM1O96005 669 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 KRT6AP02538 564 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 KRT6BP04259 564 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CA3P07451 260 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CBSLP0DN79 551 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms