RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ZNHIT2Q9UHR6 403 aa12.23□□□□□ -0.45
SHMT2-230ENST00000557427 PRKAB1Q9Y478 270 aa12.23□□□□□ -0.45
SHMT2-230ENST00000557427 PCNX1Q96RV3 2341 aa12.23□□□□□ -0.45
SHMT2-230ENST00000557427 TRBV23OR9-2A0A075B6M9 112 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 KIAA0754O94854 1291 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 TAC1P20366 129 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 MGAT1P26572 445 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 TEAD1P28347 426 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 RPA3P35244 121 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-230ENST00000557427 NPY2RP49146 381 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 CORO7P57737 925 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 ILF3Q12906 894 aaKnown RBP eCLIP12.22□□□□□ -0.45
SHMT2-230ENST00000557427 NR6A1Q15406 480 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 PDK4Q16654 411 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 SNAP47Q5SQN1 464 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 ZNF648Q5T619 568 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-230ENST00000557427 JMJD6Q6NYC1 403 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-230ENST00000557427 SH2D5Q6ZV89 423 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 ZNF765Q7L2R6 523 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 ZNF761Q86XN6 746 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-230ENST00000557427 MCEMP1Q8IX19 187 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 CTAGE3PQ8IX95 158 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 CDKL2Q92772 493 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 TADA1Q96BN2 335 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 EID2BQ96D98 161 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 OXNAD1Q96HP4 312 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-230ENST00000557427 APOPT1Q96IL0 206 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 CABS1Q96KC9 395 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 FCRL5Q96RD9 977 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 SPATA16Q9BXB7 569 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 GSDMCQ9BYG8 508 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 LRRC40Q9H9A6 602 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 BPIFA1Q9NP55 256 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 SMYD2Q9NRG4 433 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 MKS1Q9NXB0 559 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 CNOT6Q9ULM6 557 aaKnown RBP12.22□□□□□ -0.45
SHMT2-230ENST00000557427 ENTPD4Q9Y227 616 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 SLC17A4Q9Y2C5 497 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 FBN3Q75N90 2809 aa12.22□□□□□ -0.45
SHMT2-230ENST00000557427 MAGEB16A2A368 324 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 CXorf49A8MYA2 514 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-230ENST00000557427 AURKAO14965 403 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 ZW10O43264 779 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 SNX3O60493 162 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 KATNA1O75449 491 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 NDST3O95803 873 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 PYGLP06737 847 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 FOXN2P32314 431 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 CCNFP41002 786 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 PGDP52209 483 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 WNT3AP56704 352 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 SESN2P58004 480 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-230ENST00000557427 CHAF1BQ13112 559 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 CRYMQ14894 314 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 SLC1A5Q15758 541 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 HHATQ5VTY9 493 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 CPZQ66K79 652 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 SP5Q6BEB4 398 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-230ENST00000557427 TRMT10BQ6PF06 316 aaKnown RBP12.21□□□□□ -0.45
SHMT2-230ENST00000557427 TIFABQ6ZNK6 161 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 LINC00523Q86TU6 105 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 ANKS4BQ8N8V4 417 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.21□□□□□ -0.45
SHMT2-230ENST00000557427 GPR26Q8NDV2 337 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 IPMKQ8NFU5 416 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 DPYSL5Q9BPU6 564 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 TWSG1Q9GZX9 223 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 MAGEE1Q9HCI5 957 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 TRNAU1APQ9NX07 287 aaKnown RBP12.21□□□□□ -0.45
SHMT2-230ENST00000557427 SYBUQ9NX95 663 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 BFARQ9NZS9 450 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 AAR2Q9Y312 384 aaKnown RBP12.21□□□□□ -0.45
SHMT2-230ENST00000557427 ZNF711Q9Y462 761 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 SPO11Q9Y5K1 396 aa12.21□□□□□ -0.45
SHMT2-230ENST00000557427 NAV3Q8IVL0 2385 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 RGSL1A5PLK6 1076 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 FADS2P1A8MWK0 482 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 TRIM49D1C9J1S8 452 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 POLR1CO15160 346 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-230ENST00000557427 CREG1O75629 220 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 PIAS1O75925 651 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 ANXA9O76027 345 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 USP1O94782 785 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 POLBP06746 335 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 ACTR1BP42025 376 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 CHRNA4P43681 627 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 LEPRP48357 1165 aaKnown RBP12.2□□□□□ -0.46
SHMT2-230ENST00000557427 ACTR1AP61163 376 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 MGAT5Q09328 741 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 BIRC2Q13490 618 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 SEPT7Q16181 437 aaKnown RBP12.2□□□□□ -0.46
SHMT2-230ENST00000557427 PYCR3Q53H96 274 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 SIRPB2Q5JXA9 342 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 ARMC3Q5W041 872 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 CASC4Q6P4E1 433 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 KDELC1Q6UW63 502 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 GALNT13Q8IUC8 556 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 GALNT6Q8NCL4 622 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 OR52K1Q8NGK4 314 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 TCP10LQ8TDR4 215 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms