RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 C6P13671 934 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 C5AR1P21730 350 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 IL12RB1P42701 662 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 TRAF3Q13114 568 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 PHKG1Q16816 387 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 SPATS1Q496A3 300 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 PRMT9Q6P2P2 845 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 RNF111Q6ZNA4 994 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 GALNT13Q8IUC8 556 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 FAM9CQ8IZT9 166 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 FBXO27Q8NI29 283 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 ZNF420Q8TAQ5 688 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 SKA2Q8WVK7 121 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 CNDP2Q96KP4 475 aaKnown RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 PPP3R2Q96LZ3 170 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 KXD1Q9BQD3 176 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 WRAP53Q9BUR4 548 aaKnown RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 BRINP2Q9C0B6 783 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 PRO3102Q9H379 93 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 WDR41Q9HAD4 459 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 ZIM2Q9NZV7 527 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 EPS15L1Q9UBC2 864 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 GPR34Q9UPC5 381 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 PDE10AQ9Y233 779 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 ST14Q9Y5Y6 855 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 AP4B1Q9Y6B7 739 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 KANSL1LA0AUZ9 987 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 GRXCR2A6NFK2 248 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 TRIM64CA6NLI5 447 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 GPR89AB7ZAQ6 455 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 IFRD1O00458 451 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 PPP6CO00743 305 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 RGS14O43566 566 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 SYNCRIPO60506 623 aaKnown RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 UGDHO60701 494 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 ATP6V1G1O75348 118 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 E2F6O75461 281 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 BMP10O95393 424 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 KRT6AP02538 564 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 KRT6BP04259 564 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 LINC00032P0C843 101 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 GPR89BP0CG08 455 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 TEAD1P28347 426 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 GPR1P46091 355 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 KRT6CP48668 564 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 HSPA7P48741 367 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 FOXA1P55317 472 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 ERVPABLB-1P60509 514 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 CBX3Q13185 183 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 CAMK2GQ13555 558 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 AGERQ15109 404 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 LPCAT4Q643R3 524 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 SDE2Q6IQ49 451 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 DET1Q7L5Y6 550 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 TRMT11Q7Z4G4 463 aaKnown RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 PATL1Q86TB9 770 aaKnown RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 RASGRP3Q8IV61 690 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 MMAAQ8IVH4 418 aaKnown RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 CDYL2Q8N8U2 506 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 FBXO15Q8NCQ5 510 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 OR4F6Q8NGB9 312 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 FBXL8Q96CD0 374 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 RCN3Q96D15 328 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 DUS3LQ96G46 650 aaKnown RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 CLPTM1LQ96KA5 538 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 LINC00615Q96LM1 132 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 C3orf30Q96M34 536 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 TMEM79Q9BSE2 394 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 OSBPL6Q9BZF3 934 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 RSPH9Q9H1X1 276 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 TUBB1Q9H4B7 451 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 CLEC1BQ9P126 229 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 FAF1Q9UNN5 650 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-229ENST00000557348 FADS3Q9Y5Q0 445 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 CEPT1Q9Y6K0 416 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 STON1Q9Y6Q2 735 aa12.35□□□□□ -0.43
SHMT2-229ENST00000557348 ATP6AP2A0A1C7CYW4 349 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 OR7A17O14581 309 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 SPINT1O43278 529 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 NRP2O60462 931 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 PSIP1O75475 530 aaKnown RBP12.34□□□□□ -0.43
SHMT2-229ENST00000557348 ATP6AP2O75787 350 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 CAPN1P07384 714 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 C7P10643 843 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 ETS2P15036 469 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 GPX3P22352 226 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 P2RY2P41231 377 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 PSMD8P48556 350 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 ESRRGP62508 458 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 MESP2Q0VG99 397 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 STARD3Q14849 445 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 POM121L1PQ3SYA9 428 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 RAET1GQ6H3X3 334 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 LETMD1Q6P1Q0 360 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 PARM1Q6UWI2 310 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 ADAMTSL4Q6UY14 1074 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 SPNS2Q8IVW8 549 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 CHPFQ8IZ52 775 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 SLC22A15Q8IZD6 547 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 ZNF513Q8N8E2 541 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms