RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 RHOJQ9H4E5 214 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 ZNF768Q9H5H4 540 aaKnown RBP13.68□□□□□ -0.22
PTCH1-226ENST00000553011 SPHK1Q9NYA1 384 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 ACTR10Q9NZ32 417 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 POMT2Q9UKY4 750 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 PIPSLA2A3N6 862 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 TMEM8BA6NDV4 472 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 TLCD2A6NGC4 264 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 CDRT15L2A8MXV6 281 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 TOX3O15405 576 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 KDM1AO60341 852 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 PSIP1O75475 530 aaKnown RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 SPAG6O75602 509 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 FAM155BO75949 473 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 ITGA2BP08514 1039 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 CHRM5P08912 532 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 CBSLP0DN79 551 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 PRDX3P30048 256 aaKnown RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 PEBP1P30086 187 aaKnown RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 STX2P32856 288 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 CBSP35520 551 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 CCNFP41002 786 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 SKIV2L2P42285 1042 aaKnown RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 RAB28P51157 221 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 TAS2R39P59534 338 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 PDAP1Q13442 181 aaKnown RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 TBC1D25Q3MII6 688 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 TTC23LQ6PF05 361 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 IGF2-ASQ6U949 168 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 TAX1BP1Q86VP1 789 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 RELL1Q8IUW5 271 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 C2orf73Q8N5S3 287 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 PPM1NQ8N819 430 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 BMPERQ8N8U9 685 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 LINC01555Q8NAE3 123 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 KDF1Q8NAX2 398 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 KLHL6Q8WZ60 621 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 USP7Q93009 1102 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 RAD51AP1Q96B01 352 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 CD180Q99467 661 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 CPNE1Q99829 537 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 TSPYL1Q9H0U9 437 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 SIDT1Q9NXL6 827 aaKnown RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 OR6C2Q9NZP2 312 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 SEMA5BQ9P283 1151 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 SLC39A10Q9ULF5 831 aa13.67□□□□□ -0.22
PTCH1-226ENST00000553011 MTO1Q9Y2Z2 717 aaKnown RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 MDC1Q14676 2089 aaKnown RBP13.67□□□□□ -0.22
PTCH1-226ENST00000553011 C2orf74A8MZ97 194 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 B4E171 279 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 C9orf172C9J069 976 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 EIF3FO00303 357 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-226ENST00000553011 MATN2O00339 956 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 RASGRF2O14827 1237 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 ACSL3O95573 720 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 TSPAN12O95859 305 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 CATP04040 527 aaKnown RBP13.66□□□□□ -0.22
PTCH1-226ENST00000553011 PVRP15151 417 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 UGT2B7P16662 529 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 CDH3P22223 829 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 SLC5A2P31639 672 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 GP5P40197 560 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 TSPAN7P41732 249 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 MLLT3P42568 568 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-226ENST00000553011 RGS4P49798 205 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 SH3BP2P78314 561 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 ZNF460Q14592 562 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 TMEM207Q6UWW9 146 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 CLEC14AQ86T13 490 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 TRIM73Q86UV7 250 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 PROSER1Q86XN7 944 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 RASGRP3Q8IV61 690 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 GSPT2Q8IYD1 628 aaKnown RBP13.66□□□□□ -0.22
PTCH1-226ENST00000553011 OR2L8Q8NGY9 312 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 FLVCR1-AS1Q8TAF5 88 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 DENND1AQ8TEH3 1009 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 ASB11Q8WXH4 323 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 UBXN4Q92575 508 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 LINGO1Q96FE5 620 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 SLC41A2Q96JW4 573 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 ZNF578Q96N58 590 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-226ENST00000553011 OR2A14Q96R47 310 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 RBBP8Q99708 897 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 CTRCQ99895 268 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 TWSG1Q9GZX9 223 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 CAB39LQ9H9S4 337 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 APMAPQ9HDC9 416 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 THSD1Q9NS62 852 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 SLC39A1Q9NY26 324 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 FOXJ2Q9P0K8 574 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 TXNDC16Q9P2K2 825 aa13.66□□□□□ -0.22
PTCH1-226ENST00000553011 DSPP15924 2871 aaKnown RBP13.65□□□□□ -0.22
PTCH1-226ENST00000553011 SLC9B1P1A6NJY1 282 aa13.65□□□□□ -0.22
PTCH1-226ENST00000553011 ISM1B1AKI9 464 aa13.65□□□□□ -0.22
PTCH1-226ENST00000553011 GFYI3L273 518 aa13.65□□□□□ -0.22
PTCH1-226ENST00000553011 PRAMEF10O60809 474 aa13.65□□□□□ -0.22
PTCH1-226ENST00000553011 FAM153BP0C7A2 387 aa13.65□□□□□ -0.22
PTCH1-226ENST00000553011 ST6GAL1P15907 406 aa13.65□□□□□ -0.22
PTCH1-226ENST00000553011 NELFEP18615 380 aaKnown RBP13.65□□□□□ -0.22
PTCH1-226ENST00000553011 DEKP35659 375 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms