RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GMPRP36959 345 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 PLK1P53350 603 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 COPZ1P61923 177 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 PHC1P78364 1004 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 NRG1Q02297 640 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CHRNEQ04844 493 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CAMK2GQ13555 558 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 LRP8Q14114 963 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 INPP5AQ14642 412 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 USP39Q53GS9 565 aaKnown RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 TMTC4Q5T4D3 741 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 REP15Q6BDI9 236 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 KIAA1324Q6UXG2 1013 aaKnown RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 LINGO4Q6UY18 593 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 NEK10Q6ZWH5 1172 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 PIWIL3Q7Z3Z3 882 aaKnown RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 SPRED1Q7Z699 444 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 SLCO6A1Q86UG4 719 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CDKL3Q8IVW4 592 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 DEFB119Q8N690 84 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 NPWQ8N729 165 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF557Q8N988 423 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 ZFP90Q8TF47 636 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 NACC2Q96BF6 587 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CELF6Q96J87 481 aaKnown RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 DUSP15Q9H1R2 295 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 TRIT1Q9H3H1 467 aaKnown RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CATSPERBQ9H7T0 1116 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 SP140LQ9H930 580 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 AGPAT4Q9NRZ5 378 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 OXSMQ9NWU1 459 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CD300AQ9UGN4 299 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 ENPP5Q9UJA9 477 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CYP8B1Q9UNU6 501 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 ANGPTL3Q9Y5C1 460 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 PSAT1Q9Y617 370 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CEP192Q8TEP8 1941 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 LOC105371267A0A1B0GV96 52 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 DHRS12A0PJE2 317 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 HACD1B0YJ81 288 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 RNF103O00237 685 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 EI24O14681 340 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SMAD6O43541 496 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SCO2O43819 266 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 METTL18O95568 372 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CRYZL1O95825 349 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ATP6V1B2P21281 511 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 PSMA4P25789 261 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ACVRL1P37023 503 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 GP5P40197 560 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 GRIA1P42261 906 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 GRIA4P48058 902 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 PLA2G16P53816 162 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 STX1BP61266 288 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 AQP6Q13520 282 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SLC12A1Q13621 1099 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 STARD3Q14849 445 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 PLCL1Q15111 1095 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 DLG2Q15700 870 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 MAPK11Q15759 364 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 HNRNPA1L2Q32P51 320 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 AASDHQ4L235 1098 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CCDC58Q4VC31 144 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ARL13AQ5H913 290 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 C9orf64Q5T6V5 341 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 XAF1Q6GPH4 301 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TMEFF1Q8IYR6 380 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 PLD6Q8N2A8 252 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 MFSD4AQ8N468 514 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 GABPB2Q8TAK5 448 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 FRS2Q8WU20 508 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SIPA1Q96FS4 1042 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CENPNQ96H22 339 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SLC45A3Q96JT2 553 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 MAELQ96JY0 434 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SPON2Q9BUD6 331 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 OR2B2Q9GZK3 357 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 IL22Q9GZX6 179 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 NMRAL1Q9HBL8 299 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 POLE4Q9NR33 117 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 MRGBPQ9NV56 204 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SEPT10Q9P0V9 454 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TMEM181Q9P2C4 612 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 OAZ3Q9UMX2 235 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TESMINQ9Y4I5 508 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 N6AMT1Q9Y5N5 214 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 AQP12BA6NM10 295 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TAF4O00268 1085 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 DFFAO00273 331 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TOR1BO14657 336 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 FGF10O15520 208 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TPST1O60507 370 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CD160O95971 181 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 MPOP05164 745 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 APOA4P06727 396 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CDH1P12830 882 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 RHOQP17081 205 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 PGAM1P18669 254 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 GSTM2P28161 218 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms