RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 RGS9BPQ6ZS82 235 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 UBE2R2Q712K3 238 aaPredicted RBP9.28□□□□□ -0.92
YBX3-215ENST00000544504 PHACTR4Q8IZ21 702 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 GALNT15Q8N3T1 639 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 FBXO39Q8N4B4 442 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 SPATA6LQ8N4H0 392 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 RAB42Q8N4Z0 105 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 DEFB119Q8N690 84 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 CKAP2Q8WWK9 683 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 TSACCQ96A04 125 aaPredicted RBP9.28□□□□□ -0.92
YBX3-215ENST00000544504 PTERQ96BW5 349 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 PDXPQ96GD0 296 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 ATOH8Q96SQ7 321 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 TRMOQ9BU70 441 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 ZDHHC5Q9C0B5 715 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 OR52A5Q9H2C5 316 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 MVB12BQ9H7P6 319 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 MRPL40Q9NQ50 206 aaKnown RBP9.28□□□□□ -0.92
YBX3-215ENST00000544504 ZNF358Q9NW07 568 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 OXSMQ9NWU1 459 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 NCKIPSDQ9NZQ3 722 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 CD274Q9NZQ7 290 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 SIRPGQ9P1W8 387 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 CPSF2Q9P2I0 782 aaKnown RBP9.28□□□□□ -0.92
YBX3-215ENST00000544504 SPASTQ9UBP0 616 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 FAM8A1Q9UBU6 413 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 POLG2Q9UHN1 485 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 PCOLCE2Q9UKZ9 415 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 DNAJC16Q9Y2G8 782 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 STK38LQ9Y2H1 464 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 PRKAB1Q9Y478 270 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 COLEC10Q9Y6Z7 277 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 COL12A1Q99715 3063 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 DOCK9Q9BZ29 2069 aa9.28□□□□□ -0.92
YBX3-215ENST00000544504 CEP192Q8TEP8 1941 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 PRR19A6NJB7 356 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 PDZK1P1A8MUH7 402 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 TMEM114B3SHH9 223 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 G3V2L1 256 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 YKT6O15498 198 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 FFAR2O15552 330 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 CSF2P04141 144 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 SERPINE1P05121 402 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 JUNDP17535 347 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 MAOBP27338 520 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 ALDH3A1P30838 453 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 ACTR1BP42025 376 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 PIK3CGP48736 1102 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 RPIAP49247 311 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 ARRB1P49407 418 aaPredicted RBP9.27□□□□□ -0.93
YBX3-215ENST00000544504 PGGT1BP53609 377 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 ACTR1AP61163 376 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 CTBSQ01459 385 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 ABRQ12979 859 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 EIF2B5Q13144 721 aaKnown RBP9.27□□□□□ -0.93
YBX3-215ENST00000544504 STX3Q13277 289 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 KRT33BQ14525 404 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 PCLAFQ15004 111 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 TGFBIQ15582 683 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 OR4D1Q15615 310 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 PPP1R3AQ16821 1122 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 CFAP157Q5JU67 520 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 SULT1C3Q6IMI6 304 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 CAPRIN2Q6IMN6 1127 aaKnown RBP9.27□□□□□ -0.93
YBX3-215ENST00000544504 IL27RAQ6UWB1 636 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 ABRAXAS1Q6UWZ7 409 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 GKN2Q86XP6 184 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 RASGRP3Q8IV61 690 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 DCUN1D3Q8IWE4 304 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 TBC1D21Q8IYX1 336 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 SLC22A18ASQ8N1D0 253 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 PDPRQ8NCN5 879 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 GPBAR1Q8TDU6 330 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 NAT14Q8WUY8 206 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 TFGQ92734 400 aaPredicted RBP9.27□□□□□ -0.93
YBX3-215ENST00000544504 RAD51AP1Q96B01 352 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 CCDC138Q96M89 665 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 EGFL8Q99944 293 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 RAB11FIP5Q9BXF6 653 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 NSRP1Q9H0G5 558 aaKnown RBP9.27□□□□□ -0.93
YBX3-215ENST00000544504 TRIT1Q9H3H1 467 aaKnown RBP9.27□□□□□ -0.93
YBX3-215ENST00000544504 MANSC1Q9H8J5 431 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 DNAJC28Q9NX36 388 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 ARL15Q9NXU5 204 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 GULP1Q9UBP9 304 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 SLC23A2Q9UGH3 650 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 APOBEC3BQ9UH17 382 aaKnown RBP9.27□□□□□ -0.93
YBX3-215ENST00000544504 ADAM21Q9UKJ8 722 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 KCNK6Q9Y257 313 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 ASF1AQ9Y294 204 aa9.27□□□□□ -0.93
YBX3-215ENST00000544504 PCDH15Q96QU1 1955 aa9.26□□□□□ -0.93
YBX3-215ENST00000544504 TNRC6BQ9UPQ9 1833 aaKnown RBP9.26□□□□□ -0.93
YBX3-215ENST00000544504 KIR2DS5A0A0G2JLQ3 304 aa9.26□□□□□ -0.93
YBX3-215ENST00000544504 A0A0G2JNG1 304 aa9.26□□□□□ -0.93
YBX3-215ENST00000544504 A8MT66 165 aa9.26□□□□□ -0.93
YBX3-215ENST00000544504 KIR2DS3K7RE56 304 aa9.26□□□□□ -0.93
YBX3-215ENST00000544504 UBXN8O00124 270 aa9.26□□□□□ -0.93
YBX3-215ENST00000544504 KLK8O60259 260 aa9.26□□□□□ -0.93
YBX3-215ENST00000544504 DLX3O60479 287 aa9.26□□□□□ -0.93
YBX3-215ENST00000544504 NPHS1O60500 1241 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms