RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 AKR1B10O60218 316 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 CRTAMO95727 393 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 ACADLP28330 430 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 MC4RP32245 332 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 CDC16Q13042 620 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 GPR33Q49SQ1 333 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 AGAP7PQ5VUJ5 663 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 B3GNTL1Q67FW5 361 aaPredicted RBP17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 DENND5AQ6IQ26 1287 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 COX15Q7KZN9 410 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 FJX1Q86VR8 437 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 SERPINA9Q86WD7 417 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 CNDP1Q96KN2 507 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 AGAP4Q96P64 663 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 SPSB2Q99619 263 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 CHP1Q99653 195 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 NDC1Q9BTX1 674 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 VPS37BQ9H9H4 285 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 PSTPIP1O43586 416 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 ONECUT2O95948 504 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 PSMB4P28070 264 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 MARCKSL1P49006 195 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 RIPPLY3P57055 190 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 Q0VFX4 171 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 NAA30Q147X3 362 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 TCEAL1Q15170 157 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 NKG7Q16617 165 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 CAVIN1Q6NZI2 390 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 KIRREL2Q6UWL6 708 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 FAM20CQ8IXL6 584 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 PARP9Q8IXQ6 854 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 COG1Q8WTW3 980 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 FKBP10Q96AY3 582 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 DNAJC1Q96KC8 554 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 GOLPH3Q9H4A6 298 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 WDR54Q9H977 334 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 EURLQ9NYK6 297 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 OR6C2Q9NZP2 312 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 CDC23Q9UJX2 597 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 PLAGL1Q9UM63 463 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 PLCL2Q9UPR0 1127 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 ASF1AQ9Y294 204 aa17.12■□□□□ 0.33
CLSTN3-214ENST00000542663 ALAS2P22557 587 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 TPM4P67936 248 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 SLC5A12Q1EHB4 618 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 ITPRIPL1Q6GPH6 555 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 ZNF449Q6P9G9 518 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 TTLL10Q6ZVT0 673 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 OVCH1Q7RTY7 1134 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 PIANPQ8IYJ0 282 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 TBC1D21Q8IYX1 336 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 OR8K1Q8NGG5 319 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 OR5K2Q8NHB8 316 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 MESP1Q9BRJ9 268 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 SLC26A1Q9H2B4 701 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 IRAK4Q9NWZ3 460 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 KLHL20Q9Y2M5 609 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 TDRKHQ9Y2W6 561 aaKnown RBP17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 PRSS21Q9Y6M0 314 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 TACC2O95359 2948 aa17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 NCOA6Q14686 2063 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-214ENST00000542663 PKDREJQ9NTG1 2253 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 A0A1B0GUH1 482 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 A0A1B0GX78 115 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 H7C0S8 307 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 LIN7AO14910 233 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 KLHL18O94889 574 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 GSTM1P09488 218 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 MAGP20916 626 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 TDGF1P3P51864 188 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 OTUD4Q01804 1114 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 GSTM4Q03013 218 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 SPARCL1Q14515 664 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 TLR1Q15399 786 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 TUBB8Q3ZCM7 444 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 ANKRD20A2Q5SQ80 823 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 ANKRD20A1Q5TYW2 823 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 ANKRD20A3Q5VUR7 823 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 ZNF324BQ6AW86 544 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 NAPRTQ6XQN6 538 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 BBS12Q6ZW61 710 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 KATNAL2Q8IYT4 538 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 CATSPER1Q8NEC5 780 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 RELTQ969Z4 430 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 LHPPQ9H008 270 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 ARNT2Q9HBZ2 717 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 COPG2Q9UBF2 871 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 POLG2Q9UHN1 485 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 AAR2Q9Y312 384 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 ALG6Q9Y672 507 aa17.1■□□□□ 0.33
CLSTN3-214ENST00000542663 MED13LQ71F56 2210 aa17.09■□□□□ 0.33
CLSTN3-214ENST00000542663 ISM1B1AKI9 464 aa17.09■□□□□ 0.33
CLSTN3-214ENST00000542663 BHMG1C9JSJ3 638 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-214ENST00000542663 H7C0C1 242 aa17.09■□□□□ 0.33
CLSTN3-214ENST00000542663 APOC4-APOC2K7ER74 178 aa17.09■□□□□ 0.33
CLSTN3-214ENST00000542663 JRKO75564 520 aa17.09■□□□□ 0.33
CLSTN3-214ENST00000542663 AP2A2O94973 939 aa17.09■□□□□ 0.33
CLSTN3-214ENST00000542663 ZRANB2O95218 330 aaKnown RBP eCLIP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms