RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ASF1AQ9Y294 204 aa9.09□□□□□ -0.95
DDX55-208ENST00000541259 TDRKHQ9Y2W6 561 aaKnown RBP9.09□□□□□ -0.95
DDX55-208ENST00000541259 CSNK1G3Q9Y6M4 447 aa9.09□□□□□ -0.95
DDX55-208ENST00000541259 RIF1Q5UIP0 2472 aaKnown RBP9.08□□□□□ -0.96
DDX55-208ENST00000541259 LRRC14BA6NHZ5 514 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 POM121CA8CG34 1229 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 SUPT3HB4E1H0 165 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 TRIM38O00635 465 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 SLC16A5O15375 505 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 DFNA5O60443 496 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 DLX3O60479 287 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 KERAO60938 352 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 SUPT3HO75486 399 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 ZWINTO95229 277 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 CATP04040 527 aaKnown RBP9.08□□□□□ -0.96
DDX55-208ENST00000541259 RBP1P09455 135 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 MTHFD2P13995 350 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 XRCC1P18887 633 aaPredicted RBP9.08□□□□□ -0.96
DDX55-208ENST00000541259 NR1D1P20393 614 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 CYP2A7P20853 494 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 TGM1P22735 817 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 HALP42357 657 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 CCT8P50990 548 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 ATP1A2P50993 1020 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 MAZP56270 477 aaKnown RBP9.08□□□□□ -0.96
DDX55-208ENST00000541259 UBE2IP63279 158 aaKnown RBP9.08□□□□□ -0.96
DDX55-208ENST00000541259 TGFBIQ15582 683 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 ZXDCQ2QGD7 858 aaPredicted RBP9.08□□□□□ -0.96
DDX55-208ENST00000541259 CCDC153Q494R4 210 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 OGFOD3Q6PK18 319 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 ADAMTSL2Q86TH1 951 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 SDR16C5Q8N3Y7 309 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 SFRP1Q8N474 314 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 ARL14Q8N4G2 192 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 CCDC63Q8NA47 563 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 OR5K2Q8NHB8 316 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 MCOLN3Q8TDD5 553 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 SLC37A2Q8TED4 501 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 CXorf40BQ96DE9 158 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 MOCOSQ96EN8 888 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 PKNOX2Q96KN3 472 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 CAMK1GQ96NX5 476 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 IL17FQ96PD4 163 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 PKP4Q99569 1192 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 HGH1Q9BTY7 390 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 MECRQ9BV79 373 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 TRIT1Q9H3H1 467 aaKnown RBP9.08□□□□□ -0.96
DDX55-208ENST00000541259 ACSS2Q9NR19 701 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 SEMA4GQ9NTN9 838 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 CD274Q9NZQ7 290 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 NCDNQ9UBB6 729 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 CPNE7Q9UBL6 633 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 OARD1Q9Y530 152 aa9.08□□□□□ -0.96
DDX55-208ENST00000541259 ZFHX2Q9C0A1 2572 aaPredicted RBP9.08□□□□□ -0.96
DDX55-208ENST00000541259 PCNX2A6NKB5 2137 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 WDR91A4D1P6 747 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 A8MT66 165 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 CDX4O14627 284 aaPredicted RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 PPM1DO15297 605 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 TM9SF1O15321 606 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 TAPBPO15533 448 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 ENO2P09104 434 aaPredicted RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 DHRS4L1P0CG22 281 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 CPA3P15088 417 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 CHN1P15882 459 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 VARSP26640 1264 aaKnown RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 MAP4P27816 1152 aaKnown RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 OAS2P29728 719 aaKnown RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 ALDH3A1P30838 453 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 AGTR2P50052 363 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 KPNA2P52292 529 aaKnown RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 SLC18A1P54219 525 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 ATXN3P54252 364 aaPredicted RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 SP140Q13342 867 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 KRT33BQ14525 404 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 PCLAFQ15004 111 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 PFKFB4Q16877 469 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 HHATQ5VTY9 493 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 ZYG11AQ6WRX3 759 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 FRA10AC1Q70Z53 315 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 C17orf82Q86X59 251 aaPredicted RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 ZNF761Q86XN6 746 aaPredicted RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 C10orf107Q8IVU9 208 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 TRIM48Q8IWZ4 208 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 SLC35F3Q8IY50 421 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 TBC1D21Q8IYX1 336 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 C2orf73Q8N5S3 287 aaPredicted RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 EID2Q8N6I1 236 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 KYQ8NBH2 561 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 FBXO15Q8NCQ5 510 aaPredicted RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 PPFIBP2Q8ND30 876 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 GPR156Q8NFN8 814 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 OR52E1Q8NGJ3 308 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 OR9A1PQ8NGU1 263 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 ESAMQ96AP7 390 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 RHBDF1Q96CC6 855 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 PHF21BQ96EK2 531 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 PAIP2Q9BPZ3 127 aaKnown RBP9.07□□□□□ -0.96
DDX55-208ENST00000541259 MENTQ9BUN1 341 aa9.07□□□□□ -0.96
DDX55-208ENST00000541259 XKR8Q9H6D3 395 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms