RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 FAM74A3Q4VXF1 159 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 AGKQ53H12 422 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 PAN3Q58A45 887 aaKnown RBP9.27□□□□□ -0.93
CLIP1-214ENST00000540539 PDE12Q6L8Q7 609 aaKnown RBP9.27□□□□□ -0.93
CLIP1-214ENST00000540539 PRMT9Q6P2P2 845 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 KRT74Q7RTS7 529 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 MILR1Q7Z6M3 343 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 ABI3BPQ7Z7G0 1075 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 ZC3HC1Q86WB0 502 aaKnown RBP9.27□□□□□ -0.93
CLIP1-214ENST00000540539 NT5DC4Q86YG4 428 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 ZZZ3Q8IYH5 903 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 UNC5BQ8IZJ1 945 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 CYP4Z2PQ8N1L4 340 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 STPG2Q8N412 459 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 KIAA1191Q96A73 305 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 COQ8BQ96D53 544 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 RBP7Q96R05 134 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 RHNO1Q9BSD3 238 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 FEM1AQ9BSK4 669 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 C1QTNF1Q9BXJ1 281 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 CEP41Q9BYV8 373 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 C11orf54Q9H0W9 315 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-214ENST00000540539 RNF167Q9H6Y7 350 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 UBQLN2Q9UHD9 624 aa9.27□□□□□ -0.93
CLIP1-214ENST00000540539 MAFBQ9Y5Q3 323 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-214ENST00000540539 A0A1W2PPL8 197 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SLC15A5A6NIM6 579 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 KRBOX1C9JBD0 128 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 E9PAM4 449 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 G3V2L1 256 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 WRBO00258 174 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 UPK1AO00322 258 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ITGBL1O95965 494 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 IL6P05231 212 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SMIM6P0DI80 62 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ARSAP15289 507 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SYN1P17600 705 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 GADD45AP24522 165 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 PTPN7P35236 360 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 KIR2DL3P43628 341 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 RIDAP52758 137 aaKnown RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 DCDC1P59894 354 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 RNF4P78317 190 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SLC35A2P78381 396 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 HSF2Q03933 536 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 RPA4Q13156 261 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ORC1Q13415 861 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ASAH1Q13510 395 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 FASTKQ14296 549 aaKnown RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 PRPSAP1Q14558 356 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SSPNQ14714 243 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 QPRTQ15274 297 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 PAN2Q504Q3 1202 aaKnown RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SOWAHCQ53LP3 525 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 PABPC1L2AQ5JQF8 200 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 TCTE1Q5JU00 501 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SLC27A4Q6P1M0 643 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ERICH5Q6P6B1 374 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 CHMP1BQ7LBR1 199 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SRFBP1Q8NEF9 429 aaKnown RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SETD7Q8WTS6 366 aaKnown RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SLC13A3Q8WWT9 602 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 NSMAFQ92636 917 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SLC38A4Q969I6 547 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ZNF566Q969W8 418 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 LRCH3Q96II8 777 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 Q96MT0 163 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SORCS2Q96PQ0 1159 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 DPCDQ9BVM2 203 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 STARD7Q9NQZ5 370 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 DMAC2Q9NW81 257 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ZDHHC2Q9UIJ5 367 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 V9GYQ6 96 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ADGRA2Q96PE1 1338 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 A0A1B0GV90 55 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 TCRBV5S2A0A599 114 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 GRXCR2A6NFK2 248 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 H7C2Y5 167 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 MEIS1O00470 390 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 TRIM13O60858 407 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 MPC2O95563 127 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 CD63P08962 238 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ZNF806P0C7X5 589 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 NSFP46459 744 aaKnown RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 NRIP1P48552 1158 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 KCNAB2Q13303 367 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 GPR17Q13304 367 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 MAMLD1Q13495 774 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 VGLL4Q14135 290 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SIM2Q14190 667 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 COL28A1Q2UY09 1125 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 AP5B1Q2VPB7 878 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ARL13AQ5H913 290 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 FUT10Q6P4F1 479 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 SCARA5Q6ZMJ2 495 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 PELI3Q8N2H9 469 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 KLHL36Q8N4N3 616 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 PAPD5Q8NDF8 572 aaKnown RBP9.26□□□□□ -0.93
CLIP1-214ENST00000540539 CLHC1Q8NHS4 586 aa9.26□□□□□ -0.93
CLIP1-214ENST00000540539 ACER1Q8TDN7 264 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms