RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 EIF3KQ9UBQ5 218 aaKnown RBP10.46□□□□□ -0.74
CLIP1-209ENST00000537178 CIDEBQ9UHD4 219 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 ALG5Q9Y673 324 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 TRBV23OR9-2A0A075B6M9 112 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 KANTRA0A1W2PQU2 76 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 AHCYP23526 432 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 YAP1P46937 504 aaKnown RBP10.46□□□□□ -0.74
CLIP1-209ENST00000537178 RPP38P78345 283 aaKnown RBP10.46□□□□□ -0.74
CLIP1-209ENST00000537178 MPP2Q14168 576 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 IQCCQ4KMZ1 466 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 COLEC12Q5KU26 742 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 TSTD2Q5T7W7 516 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 KCTD8Q6ZWB6 473 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 DEFB132Q7Z7B7 95 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 SLC22A15Q8IZD6 547 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 ZNF676Q8N7Q3 588 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 PNLDC1Q8NA58 520 aaKnown RBP10.46□□□□□ -0.74
CLIP1-209ENST00000537178 OR5K1Q8NHB7 308 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 LRTOMTQ8WZ04 291 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 DENND2DQ9H6A0 471 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-209ENST00000537178 TLE6Q9H808 572 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 FARSBQ9NSD9 589 aaKnown RBP10.46□□□□□ -0.74
CLIP1-209ENST00000537178 TLL2Q9Y6L7 1015 aa10.46□□□□□ -0.74
CLIP1-209ENST00000537178 A0A1W2PRQ8 180 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 RHPN2P1A8MT19 583 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ZNF99A8MXY4 864 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 SLC7A4O43246 635 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 NUAK1O60285 661 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 CILPO75339 1184 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 POU2F1P14859 743 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 GDI2P50395 445 aaKnown RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 TAS2R50P59544 299 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 BLMHQ13867 455 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 PUM1Q14671 1186 aaKnown RBP eCLIP10.45□□□□□ -0.745e-6■□□□□ 10.2
CLIP1-209ENST00000537178 CRY2Q49AN0 593 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 C4orf46Q504U0 113 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 NRSN1Q8IZ57 195 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 GALNT15Q8N3T1 639 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 FSTL5Q8N475 847 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 TMEM145Q8NBT3 493 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 DCAKDQ8WVC6 231 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ITFG2Q969R8 447 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MCCC2Q9HCC0 563 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 COMMD3Q9UBI1 195 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ROBO3Q96MS0 1386 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 SMIM28A0A1B0GU29 152 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 NT5C1B-RDH14C9J2C7 533 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 SLC33A1O00400 549 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MATN3O15232 486 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 SLC22A2O15244 555 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 LRCH4O75427 683 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ZNF20P17024 532 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 CPN2P22792 545 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 TPTEP56180 551 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 DSC2Q02487 901 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 HNRNPDQ14103 355 aaKnown RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 PPM1JQ5JR12 505 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 UBXN11Q5T124 520 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 GPR142Q7Z601 462 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 DCBLD1Q8N8Z6 715 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MINDY2Q8NBR6 621 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ATAD1Q8NBU5 361 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 UPF1Q92900 1129 aaKnown RBP eCLIP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 PMEPA1Q969W9 287 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 IL12RB2Q99665 862 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 OSER1Q9NX31 292 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ALKBH4Q9NXW9 302 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MAFFQ9ULX9 164 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ERVK-11Q9UQG0 969 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MAU2Q9Y6X3 613 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 PTPRJQ12913 1337 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 IRF6O14896 467 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 B3GALT2O43825 422 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ATF4P18848 351 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ARL3P36405 182 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MAP3K8P41279 467 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MPP1Q00013 466 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 PTP4A2Q12974 167 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 TARDBPQ13148 414 aaKnown RBP eCLIP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MAPK14Q16539 360 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 SLC8B1Q6J4K2 584 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 TMEM214Q6NUQ4 689 aaKnown RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ANKRD46Q86W74 232 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 SERPINA9Q86WD7 417 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 OR6K6Q8NGW6 343 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 SPOCK2Q92563 424 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MFSD3Q96ES6 412 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 KCTD15Q96SI1 283 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 SLC22A4Q9H015 551 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 DPEP2Q9H4A9 486 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ELAC1Q9H777 363 aaKnown RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 CD320Q9NPF0 282 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 TBX1O43435 398 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 GMFGO60234 142 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 FAM155BO75949 473 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 IFNA7P01567 189 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 MTHFD1P11586 935 aaKnown RBP10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ITGB5P18084 799 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 NSG1P42857 185 aa10.45□□□□□ -0.74
CLIP1-209ENST00000537178 ARPC4P59998 168 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms