RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TMEM179Q6ZVK1 233 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 MTSS1LQ765P7 747 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 PRSS45Q7RTY3 260 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 MUC20Q8N307 709 aaPredicted RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 FRMD1Q8N878 549 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 TMEM116Q8NCL8 245 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 C1orf131Q8NDD1 294 aaKnown RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 OR4N2Q8NGD1 307 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 GPT2Q8TD30 523 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 SCFD2Q8WU76 684 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 FGF14Q92915 247 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 STRA6Q9BX79 667 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 FZD8Q9H461 694 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 MVB12BQ9H7P6 319 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 CLK4Q9HAZ1 481 aaKnown RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 RAVER2Q9HCJ3 691 aaKnown RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 TCF7L2Q9NQB0 619 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 NKIRAS2Q9NYR9 191 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 INTS6Q9UL03 887 aaKnown RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 NDRG2Q9UN36 371 aaKnown RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 ADAM18Q9Y3Q7 739 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 FBN1P35555 2871 aaKnown RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 BSNQ9UPA5 3926 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 F5P12259 2224 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 ZMYM6O95789 1325 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 ARHGAP10A1A4S6 786 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 PTGES3LE9PB15 166 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 SEC31AO94979 1220 aaKnown RBP3.81□□□□□ -1.8
CD44-235ENST00000532339 CXCL14O95715 111 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 EIF2S1P05198 315 aaKnown RBP3.81□□□□□ -1.8
CD44-235ENST00000532339 HEXAP06865 529 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 GHRP10912 638 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 AKR1B1P15121 316 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 ZNF8P17098 575 aaPredicted RBP3.81□□□□□ -1.8
CD44-235ENST00000532339 CDH2P19022 906 aaPredicted RBP3.81□□□□□ -1.8
CD44-235ENST00000532339 MYF6P23409 242 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 POU1F1P28069 291 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 ACSL1P33121 698 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 TTKP33981 857 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 CA8P35219 290 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 RPL3P39023 403 aaKnown RBP3.81□□□□□ -1.8
CD44-235ENST00000532339 ARSFP54793 590 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 IRX4P78413 519 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 FAM27E3Q08E93 113 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 MYBPHQ13203 477 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 WTAPQ15007 396 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 ALG11Q2TAA5 492 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 RILPL1Q5EBL4 403 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 XKR9Q5GH70 373 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 BEND3Q5T5X7 828 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 TXNDC8Q6A555 127 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 ZNF280DQ6N043 979 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 TMPRSS12Q86WS5 348 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 HDDC3Q8N4P3 179 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 SRBD1Q8N5C6 995 aaKnown RBP3.81□□□□□ -1.8
CD44-235ENST00000532339 TMEM170AQ8WVE7 144 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 ARHGEF2Q92974 986 aaKnown RBP3.81□□□□□ -1.8
CD44-235ENST00000532339 ATP6V0A1Q93050 837 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 WDFY2Q96P53 400 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 PKP4Q99569 1192 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 FTHL17Q9BXU8 183 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 GAREM1Q9H706 876 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 POLR1BQ9H9Y6 1135 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 SLC38A10Q9HBR0 1119 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 HEBP1Q9NRV9 189 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 TMEM51Q9NW97 253 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 AATFQ9NY61 560 aaKnown RBP eCLIP3.81□□□□□ -1.8
CD44-235ENST00000532339 PCDHGB4Q9UN71 923 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 PAM16Q9Y3D7 125 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 NFS1Q9Y697 457 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 CELSR2Q9HCU4 2923 aa3.81□□□□□ -1.8
CD44-235ENST00000532339 NIPBLQ6KC79 2804 aaeCLIP3.81□□□□□ -1.8
CD44-235ENST00000532339 MUC22E2RYF6 1773 aaPredicted RBP3.81□□□□□ -1.8
CD44-235ENST00000532339 SVILO95425 2214 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 DOCK8Q8NF50 2099 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 ATG2BQ96BY7 2078 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 SAA2-SAA4A0A096LPE2 208 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 FAM237BA0A1B0GVD1 139 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 B4DLN1 442 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 BCAT2O15382 392 aaPredicted RBP3.8□□□□□ -1.8
CD44-235ENST00000532339 PLOD3O60568 738 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 OR2C1O95371 312 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 CH25HO95992 272 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 IGLV2-11P01706 119 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 UMODP07911 640 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 SCG2P13521 617 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 RARGP13631 454 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 HLA-EP13747 358 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 RRM1P23921 792 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 HOXC8P31273 242 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 UCNP55089 124 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 CEBPZQ03701 1054 aaKnown RBP3.8□□□□□ -1.8
CD44-235ENST00000532339 CHAF1BQ13112 559 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 LPIN1Q14693 890 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 KARSQ15046 597 aaKnown RBP3.8□□□□□ -1.8
CD44-235ENST00000532339 RNPS1Q15287 305 aaKnown RBP3.8□□□□□ -1.8
CD44-235ENST00000532339 TAF11Q15544 211 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 GSTA3Q16772 222 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 EDRF1Q3B7T1 1238 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 GET4Q7L5D6 327 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms