RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 GPS2Q13227 327 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 DNASE1L3Q13609 305 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 ERV3-1Q14264 604 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 DEFB109BQ30KR1 87 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 DNAJC21Q5F1R6 531 aaKnown RBP9.03□□□□□ -0.96
HDAC3-215ENST00000519474 CTSL3PQ5NE16 218 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 ARMC3Q5W041 872 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 ICE2Q659A1 982 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 NEPROQ6NW34 567 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 BORAQ6PGQ7 559 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 SPESP1Q6UW49 350 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 CENPUQ71F23 418 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 TMEM135Q86UB9 458 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 TRIM73Q86UV7 250 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 LRRC6Q86X45 466 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 SPNS2Q8IVW8 549 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 FAM20CQ8IXL6 584 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 DNAJC22Q8N4W6 341 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 C2orf73Q8N5S3 287 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-215ENST00000519474 LINC01555Q8NAE3 123 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 CT55Q8WUE5 264 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 STARD8Q92502 1023 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 PDLIM2Q96JY6 352 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 NAP1L3Q99457 506 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-215ENST00000519474 ARPC5LQ9BPX5 153 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 SPRTNQ9H040 489 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-215ENST00000519474 SOHLH2Q9NX45 425 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 OR6C2Q9NZP2 312 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 KCND3Q9UK17 655 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 CRYL1Q9Y2S2 319 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 PCDHB3Q9Y5E6 796 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 NFS1Q9Y697 457 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 MGAQ8IWI9 3026 aa9.03□□□□□ -0.96
HDAC3-215ENST00000519474 CCDC189A1A4V9 331 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 ISM1B1AKI9 464 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 TMEM150CB9EJG8 249 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 MEN1O00255 615 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 PGRMC1O00264 195 aaKnown RBP9.02□□□□□ -0.97
HDAC3-215ENST00000519474 KPNA5O15131 536 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 ZNF749O43361 778 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 KIF5CO60282 957 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 PHF2O75151 1096 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 SCRG1O75711 98 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 C1orf105O95561 183 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 APOA4P06727 396 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 CTSBP07858 339 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 PLA2G2AP14555 144 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 CD9P21926 228 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 RORAP35398 523 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 PTGIRP43119 386 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 MAGEA8P43361 318 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 CCR10P46092 362 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 ADARP55265 1226 aaKnown RBP9.02□□□□□ -0.97
HDAC3-215ENST00000519474 EIF3BP55884 814 aaKnown RBP9.02□□□□□ -0.97
HDAC3-215ENST00000519474 NFATC3Q12968 1075 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 DHX34Q14147 1143 aaKnown RBP9.02□□□□□ -0.97
HDAC3-215ENST00000519474 GBX1Q14549 363 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 TYSND1Q2T9J0 566 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 SYTL3Q4VX76 610 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 C4orf46Q504U0 113 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 PAPD7Q5XG87 772 aaKnown RBP9.02□□□□□ -0.97
HDAC3-215ENST00000519474 KIAA0930Q6ICG6 404 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-215ENST00000519474 MRNIPQ6NTE8 343 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 CILP2Q8IUL8 1156 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 TMEM126BQ8IUX1 230 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 DSELQ8IZU8 1212 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 APOBEC4Q8WW27 367 aaKnown RBP9.02□□□□□ -0.97
HDAC3-215ENST00000519474 LPGAT1Q92604 370 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 TCTN2Q96GX1 697 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 LRFN5Q96NI6 719 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 SERPINB12Q96P63 405 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 IL17FQ96PD4 163 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 PANX3Q96QZ0 392 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 TSSK1BQ9BXA7 367 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 GPR87Q9BY21 358 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 CHRNA10Q9GZZ6 450 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 SLC25A18Q9H1K4 315 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 CHST8Q9H2A9 424 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 ADNPQ9H2P0 1102 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 IL1RAPL1Q9NZN1 696 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 CIDEBQ9UHD4 219 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 GNPTGQ9UJJ9 305 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 KCNMB2Q9Y691 235 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 FAM169AQ9Y6X4 670 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 NBEAQ8NFP9 2946 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 SEC16AO15027 2179 aa9.02□□□□□ -0.97
HDAC3-215ENST00000519474 A0A0J9YY10 115 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 C21orf140B9A014 251 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 LOC400499M0QZD8 3231 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CPNE3O75131 537 aaKnown RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 NIPSNAP2O75323 286 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 HAUS5O94927 633 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 MATN4O95460 622 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 KLK3P07288 261 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 F7P08709 466 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 PKMP14618 531 aaKnown RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CHRM3P20309 590 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 OGNP20774 298 aaKnown RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 PTPN4P29074 926 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 PKLRP30613 574 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms