RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 KLHL3Q9UH77 587 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 AKAP13Q12802 2813 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 A0A087WUV0 522 aaPredicted RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 PIPSLA2A3N6 862 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 GSAPA4D1B5 854 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 BTN3A1O00481 513 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 MAP3K7O43318 606 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 MPOP05164 745 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 ITGA2BP08514 1039 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 ABHD2P08910 425 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 CHRM5P08912 532 aaPredicted RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 TPBGLP0DKB5 382 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 SAT1P21673 171 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 PRDX3P30048 256 aaKnown RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 KPNA2P52292 529 aaKnown RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 PMS2P54278 862 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 TAS2R39P59534 338 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 SP140Q13342 867 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 GRB7Q14451 532 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 USP10Q14694 798 aaKnown RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 TMEM164Q5U3C3 297 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 ANKS6Q68DC2 871 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 CYB5D1Q6P9G0 228 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 UNQ6494/PRO21346Q6UXR6 183 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 FAM92BQ6ZTR7 304 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 CNPY4Q8N129 248 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 OR2L8Q8NGY9 312 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 HMGCLL1Q8TB92 370 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 MCOLN3Q8TDD5 553 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 LINGO1Q96FE5 620 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 ZNF578Q96N58 590 aaPredicted RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 SLC46A1Q96NT5 459 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 MENTQ9BUN1 341 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 SLC12A9Q9BXP2 914 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 TMEM121BQ9BXQ6 578 aaPredicted RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 TWSG1Q9GZX9 223 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 CCDC86Q9H6F5 360 aaKnown RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 ACTR10Q9NZ32 417 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 TSR3Q9UJK0 312 aaKnown RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 POMT2Q9UKY4 750 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 PLAGL1Q9UM63 463 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 RUVBL2Q9Y230 463 aaKnown RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 MTO1Q9Y2Z2 717 aaKnown RBP13.82□□□□□ -0.2
NUP54-216ENST00000514901 IKBKGQ9Y6K9 419 aa13.82□□□□□ -0.2
NUP54-216ENST00000514901 AHCTF1Q8WYP5 2266 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 APC2O95996 2303 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 ARHGEF33A8MVX0 844 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 MYO1CO00159 1063 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 TNFSF15O95150 251 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 FKBP9O95302 570 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 ZBTB11O95625 1053 aaPredicted RBP13.81□□□□□ -0.2
NUP54-216ENST00000514901 STMN1P16949 149 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 ZNF37AP17032 561 aaPredicted RBP13.81□□□□□ -0.2
NUP54-216ENST00000514901 NELFEP18615 380 aaKnown RBP13.81□□□□□ -0.2
NUP54-216ENST00000514901 CYP2A7P20853 494 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 CRABP2P29373 138 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 BDKRB1P46663 353 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 ARL4DP49703 201 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 RAB15P59190 212 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 ERVPABLB-1P60509 514 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 CYP4F3Q08477 520 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 CYP2A13Q16696 494 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 FOXR1Q6PIV2 292 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 SPESP1Q6UW49 350 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 UBE2R2Q712K3 238 aaPredicted RBP13.81□□□□□ -0.2
NUP54-216ENST00000514901 PIWIL4Q7Z3Z4 852 aaKnown RBP13.81□□□□□ -0.2
NUP54-216ENST00000514901 CCDC91Q7Z6B0 441 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 PRR11Q96HE9 360 aaPredicted RBP13.81□□□□□ -0.2
NUP54-216ENST00000514901 MAP3K3Q99759 626 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 TRIM54Q9BYV2 358 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 TXLNGYQ9BZA5 131 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 ANKZF1Q9H8Y5 726 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 PARVBQ9HBI1 364 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 GPAMQ9HCL2 828 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 FBXO8Q9NRD0 319 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 THSD1Q9NS62 852 aa13.81□□□□□ -0.2
NUP54-216ENST00000514901 URB1O60287 2271 aaKnown RBP13.8□□□□□ -0.2
NUP54-216ENST00000514901 PCM1Q15154 2024 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 IGHV5-51A0A0C4DH38 117 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 A0A1W2PNU3 283 aaPredicted RBP13.8□□□□□ -0.2
NUP54-216ENST00000514901 PABPN1LA6NDY0 278 aaKnown RBP13.8□□□□□ -0.2
NUP54-216ENST00000514901 EFCAB7A8K855 629 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 ISM1B1AKI9 464 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 RIPK2O43353 540 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 KIF1CO43896 1103 aaKnown RBP13.8□□□□□ -0.2
NUP54-216ENST00000514901 BRINP1O60477 761 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 TSPAN12O95859 305 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 INHBAP08476 426 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 HIST1H2AGP0C0S8 130 aaPredicted RBP13.8□□□□□ -0.2
NUP54-216ENST00000514901 FAM153BP0C7A2 387 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 FGF3P11487 239 aaPredicted RBP13.8□□□□□ -0.2
NUP54-216ENST00000514901 HIST1H2ADP20671 130 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 CDH3P22223 829 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 MSH2P43246 934 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 SERPINB9P50453 376 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 RAB10P61026 200 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 PPP1CAP62136 330 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 HSD11B2P80365 405 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 MC2RQ01718 297 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 SLC5A12Q1EHB4 618 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms