RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 XPNPEP1Q9NQW7 623 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 PIM2Q9P1W9 311 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 MED31Q9Y3C7 131 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 TVP23AA6NH52 213 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 C1QTNF3-AMACRE9PGA6 284 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 ADAMTS3O15072 1205 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 PLATP00750 562 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 ANXA4P09525 319 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 CKBP12277 381 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 RPS14P62263 151 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 BLOC1S1P78537 153 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 C2orf80Q0P641 193 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 SEC23AQ15436 765 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 GPR153Q6NV75 609 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 METTL7BQ6UX53 244 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 CCBE1Q6UXH8 406 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 ALDH16A1Q8IZ83 802 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 GDPD1Q8N9F7 314 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC43A3Q8NBI5 491 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 OR10A6Q8NH74 314 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 AHCYL2Q96HN2 611 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 GPRC5CQ9NQ84 441 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 ARL5AQ9Y689 179 aa11.03□□□□□ -0.64
LIMCH1-217ENST00000512946 ATP6V1G2-DDX39BF2Z307 99 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 FLRT2O43155 660 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 RBBP9O75884 186 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 PRPS1L1P21108 318 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 ITPKBP27987 946 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 CD6P30203 668 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 MSX2P35548 267 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 ABCG1P45844 678 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 THOP1P52888 689 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 PPATQ06203 517 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 SNAPC2Q13487 334 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 DSC3Q14574 896 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 CRB2Q5IJ48 1285 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 CERCAMQ5T4B2 595 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 SCIMPQ6UWF3 145 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 C3orf67Q6ZVT6 689 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 SCUBE3Q8IX30 993 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 PCSK9Q8NBP7 692 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 OR2AJ1Q8NGZ0 328 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 ZBED6CLQ96FA7 236 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 ZBED3Q96IU2 234 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 OR51E2Q9H255 320 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 AGO4Q9HCK5 861 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 CFAP97Q9P2B7 532 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNHIT2Q9UHR6 403 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 OAZ3Q9UMX2 235 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 GRIN2DO15399 1336 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 PLA2R1Q13018 1463 aa11.02□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF705EA8MWA4 302 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 SSX5O60225 188 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 LRATO95237 230 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 PAHP00439 452 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 H2AFB2P0C5Z0 115 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 KELP23276 732 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 VEGFCP49767 419 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 WNT3AP56704 352 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 VLDLRP98155 873 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 LAMTOR4Q0VGL1 99 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 TSTQ16762 297 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 MED27Q6P2C8 311 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 UGT2A3Q6UWM9 527 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC30A10Q6XR72 485 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 LRRC55Q6ZSA7 311 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 BBS1Q8NFJ9 593 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 CXorf40AQ8TE69 158 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 PPP1R13LQ8WUF5 828 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 GTPBP3Q969Y2 492 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC45A3Q96JT2 553 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 TMEM68Q96MH6 324 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 TAAR1Q96RJ0 339 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 SEMA3CQ99985 751 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 MCMBPQ9BTE3 642 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 EIF5A2Q9GZV4 153 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 OR10A4Q9H209 315 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 C11orf16Q9NQ32 467 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 MARCH2Q9P0N8 246 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 MAP10Q9P2G4 905 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 NFASCO94856 1347 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 PTPRJQ12913 1337 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ELOA3DA6NLF2 546 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF670-ZNF695F2Z2N8 137 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 CTPS1P17812 591 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 RAB3BP20337 219 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 FMO1Q01740 532 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 TARDBPQ13148 414 aaKnown RBP eCLIP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 HLFQ16534 295 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ELOA3BQ3SY89 546 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 SH3PXD2AQ5TCZ1 1133 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 KIAA1614Q5VZ46 1190 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 CMC1Q7Z7K0 106 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 SCML4Q8N228 414 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 GTPBP8Q8N3Z3 284 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ELOA3Q8NG57 546 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 EDEM1Q92611 657 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 TWNKQ96RR1 684 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 PRMT8Q9NR22 394 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 TUBG2Q9NRH3 451 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms