RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 GTF2H3Q13889 308 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 VEPH1Q14D04 833 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 PYDC2Q56P42 97 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 DET1Q7L5Y6 550 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC46A3Q7Z3Q1 461 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC44A2Q8IWA5 706 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SCUBE3Q8IX30 993 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 BLOC1S5Q8TDH9 187 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 PDLIM5Q96HC4 596 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 TEX37Q96LM6 180 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 QRFPRQ96P65 431 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 MRPL57Q9BQC6 102 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 MIOSQ9NXC5 875 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 COPZ2Q9P299 210 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF222Q9UK12 451 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ADAMTSL3P82987 1691 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 A0A0A0MRY4 1105 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 MYO1GB0I1T2 1018 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ITGB1P05556 798 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 BTF3P20290 206 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 RPL9P32969 192 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 RPS8P62241 208 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 RPL6Q02878 288 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 IFRD2Q12894 506 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 HKDC1Q2TB90 917 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 WSCD2Q2TBF2 565 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC35F1Q5T1Q4 408 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 RGMBQ6NW40 437 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 BHLHB9Q6PI77 547 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ILDR2Q71H61 639 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 CDH26Q8IXH8 852 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 GPALPP1Q8IXQ4 340 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 CHCHD4Q8N4Q1 142 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 POF1BQ8WVV4 589 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC47A1Q96FL8 570 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SPATA13Q96N96 652 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 CNPPD1Q9BV87 410 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SNRNP25Q9BV90 132 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ABCB9Q9NP78 766 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 CASS4Q9NQ75 786 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 UBQLN2Q9UHD9 624 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 TMEFF2Q9UIK5 374 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ING4Q9UNL4 249 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 TRAPPC4Q9Y296 219 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 TLR6Q9Y2C9 796 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 RPH3AQ9Y2J0 694 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 FAM240BA0A1B0GVZ2 78 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 UBFD1O14562 309 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC16A6O15403 523 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 C1RP00736 705 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ACSM4P0C7M7 580 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SUPT20HL2P0C7V6 817 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ERCC2P18074 760 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ETV6P41212 452 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF81P51508 661 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 NUDT6P53370 316 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 BAMBIQ13145 260 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ABI3BPQ7Z7G0 1075 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 DENND1CQ8IV53 801 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 OSCARQ8IYS5 282 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ATG16L2Q8NAA4 619 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 UBA3Q8TBC4 463 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 GTF3C2Q8WUA4 911 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 TMEM174Q8WUU8 243 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 GPRASP2Q96D09 838 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 PIWIL1Q96J94 861 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 SNTG1Q9NSN8 517 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ACSL5Q9ULC5 683 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 ABCG2Q9UNQ0 655 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 COL4A1P02462 1669 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 ZCWPW2A0A1B0GU75 182 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 RPS10-NUDT3A0A1W2PQS6 291 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC30A4O14863 429 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 PIP5K1BO14986 540 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 ANKRD28O15084 1053 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 IFNA7P01567 189 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 TSPAN19P0C672 248 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 HTR1EP28566 365 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 HOXA1P49639 335 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 RGS7P49802 495 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 EEFSECP57772 596 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 RRAS2P62070 204 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 MXD1Q05195 221 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 PUDPQ08623 228 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 LARS2Q15031 903 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 IQCCQ4KMZ1 466 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 ZC3H12BQ5HYM0 836 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 GNASQ5JWF2 1037 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 MPP7Q5T2T1 576 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF648Q5T619 568 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF782Q6ZMW2 699 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 FAM92BQ6ZTR7 304 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 OTOP2Q7RTS6 562 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 ZC3HC1Q86WB0 502 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF675Q8TD23 568 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 KIF12Q96FN5 646 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 BARD1Q99728 777 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 MLPHQ9BV36 600 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 SRRQ9GZT4 340 aa11.79□□□□□ -0.52
LIMCH1-213ENST00000511496 MAGEL2Q9UJ55 1249 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms