RNA–Protein interactions for RNA: ENST00000511439.5

TOPBP1-208, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 1,142 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-208ENST00000511439 HSP90AA1P07900 732 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 SMIM10L2AP0DMW4 78 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 SMIM10L2BP0DMW5 78 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 FGF3P11487 239 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 CDH2P19022 906 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 RPL3P39023 403 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 GLUD2P49448 558 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 MRPL12P52815 198 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 ARF3P61204 181 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 ARF1P84077 181 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 EGR4Q05215 589 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 CSTF3Q12996 717 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 FRG1Q14331 258 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 NEDD9Q14511 834 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 DRAP1Q14919 205 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 MED22Q15528 200 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 USP41Q3LFD5 358 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 ZNF628Q5EBL2 1059 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 CXorf66Q5JRM2 361 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 PMS2CLQ68D20 193 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 ZNF324BQ6AW86 544 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 HIST2H2BDQ6DRA6 164 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 TTI2Q6NXR4 508 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 NCEH1Q6PIU2 408 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 CYP20A1Q6UW02 462 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 QSOX2Q6ZRP7 698 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 FAM43BQ6ZT52 329 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 NAXDQ8IW45 347 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 SLC39A11Q8N1S5 342 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 FRMD1Q8N878 549 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 OR14A16Q8NHC5 309 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 FGF11Q92914 225 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 PHF21BQ96EK2 531 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 MMABQ96EY8 250 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 LGMNQ99538 433 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 SLC25A33Q9BSK2 321 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 GTPBP2Q9BX10 602 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 ESRP2Q9H6T0 727 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 POLR1BQ9H9Y6 1135 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 KIF9Q9HAQ2 790 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 FBRSL1Q9HCM7 1045 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 STARD5Q9NSY2 213 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 SEPT11Q9NVA2 429 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 HCFC1R1Q9NWW0 138 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 SWAP70Q9UH65 585 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 FBXO9Q9UK97 447 aaPredicted RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 PAM16Q9Y3D7 125 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 ADAM18Q9Y3Q7 739 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 LYVE1Q9Y5Y7 322 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 CEPT1Q9Y6K0 416 aa3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 ASCC3Q8N3C0 2202 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 SPTBN1Q01082 2364 aaKnown RBP3.53□□□□□ -1.84
TOPBP1-208ENST00000511439 MGAQ8IWI9 3026 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 PCNX2A6NKB5 2137 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 FANCIQ9NVI1 1328 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 DOCK8Q8NF50 2099 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 BOD1L1Q8NFC6 3051 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 CPED1A4D0V7 1026 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 VPS37CA5D8V6 355 aaPredicted RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 FAM149AA5PLN7 773 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 TIPRLO75663 272 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 MLYCDO95822 493 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 RARGP13631 454 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 EEF2P13639 858 aaKnown RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 CD59P13987 128 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 CD52P31358 61 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 HNRNPH1P31943 449 aaKnown RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 ACTN2P35609 894 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 TMPOP42166 694 aaKnown RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 RAD23BP54727 409 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 SORDQ00796 357 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 GABPAQ06546 454 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 KLRC3Q07444 240 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 MGAT3Q09327 533 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 NIPAL4Q0D2K0 466 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 TRAF2Q12933 501 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 TRAF3Q13114 568 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 MVPQ14764 893 aaKnown RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 EFNB3Q15768 340 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 RABL6Q3YEC7 729 aaPredicted RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 MMEL1Q495T6 779 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 EFHC1Q5JVL4 640 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 C6orf141Q5SZD1 244 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 TYW3Q6IPR3 259 aaKnown RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 IKBIPQ70UQ0 350 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 MARCH9Q86YJ5 346 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 SPATA2LQ8IUW3 424 aaPredicted RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 WDR63Q8IWG1 891 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 ARHGAP12Q8IWW6 846 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 CLIP4Q8N3C7 705 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 MINDY1Q8N5J2 469 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 PDILTQ8N807 584 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 ZBTB8BQ8NAP8 495 aaPredicted RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 ELP5Q8TE02 316 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 FAM216AQ8WUB2 273 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 SNRNP27Q8WVK2 155 aaKnown RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 FGF13Q92913 245 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 ZNF707Q96C28 371 aaPredicted RBP3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 MED30Q96HR3 178 aa3.52□□□□□ -1.85
TOPBP1-208ENST00000511439 TXNDC15Q96J42 360 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms