RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 STYXQ8WUJ0 223 aa8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 STARD8Q92502 1023 aa8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 DACT3Q96B18 629 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 SCRN2Q96FV2 425 aa8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 TRIB3Q96RU7 358 aa8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 UHRF1Q96T88 793 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 SEPHS2Q99611 448 aa8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 PKD2L2Q9NZM6 624 aa8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 CCDC167Q9P0B6 97 aa8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 MRPS17Q9Y2R5 130 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-209ENST00000509277 A0A1W2PQU0 124 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SOCS5O75159 536 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 GPC4O75487 556 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 KLHL2O95198 593 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 C6P13671 934 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SPRP35270 261 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 HSPA14Q0VDF9 509 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF423Q2M1K9 1284 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 TNFAIP8L3Q5GJ75 292 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 TEDDM1Q5T9Z0 273 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 C10orf107Q8IVU9 208 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 MAGEE2Q8TD90 523 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 GLMNQ92990 594 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 FBXL20Q96IG2 436 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 KIFC1Q9BW19 673 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 CLPBQ9H078 707 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 PLAC1Q9HBJ0 212 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 POLMQ9NP87 494 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 LATS2Q9NRM7 1088 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SPATA6Q9NWH7 488 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 USP34Q70CQ2 3546 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 ATP6AP2A0A1C7CYW4 349 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 ATP6AP2O75787 350 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 GFAPP14136 432 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 VIPR1P32241 457 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SPAM1P38567 509 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 IST1P53990 364 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 IRF9Q00978 393 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 PTSQ03393 145 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 KRT72Q14CN4 511 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF641Q96N77 438 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 TMEM245Q9H330 911 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 RETREG1Q9H6L5 497 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 CYP4F12Q9HCS2 524 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 IL26Q9NPH9 171 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 TUBA8Q9NY65 449 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC24A2Q9UI40 661 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 CLOCKO15516 846 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SPAG6O75602 509 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SERPINA6P08185 405 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 GRIA3P42263 894 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 CRY1Q16526 586 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 CMPK2Q5EBM0 449 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 EOGTQ5NDL2 527 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 FAM219BQ5XKK7 198 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 TMEM135Q86UB9 458 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 PELI3Q8N2H9 469 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 KYQ8NBH2 561 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 OR2T3Q8NH03 318 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 ISG20Q96AZ6 181 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC29A1Q99808 456 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 PARVBQ9HBI1 364 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 GPAMQ9HCL2 828 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 DUSP12Q9UNI6 340 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 SIT1Q9Y3P8 196 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 PCDHGA8Q9Y5G5 932 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 N6AMT1Q9Y5N5 214 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 BPTFQ12830 3046 aa8.5□□□□□ -1.05
LIMCH1-209ENST00000509277 H0Y8X5 98 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 WNT9AO14904 365 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 TFECO14948 347 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 SNX2O60749 519 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 H6PDO95479 791 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 EPOP01588 193 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 C1SP09871 688 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 TSPAN8P19075 237 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 CA5AP35218 305 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MAGEA6P43360 314 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MS4A2Q01362 244 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 AFTPHQ6ULP2 937 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 ADCK1Q86TW2 530 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 KCTD4Q8WVF5 259 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC44A1Q8WWI5 657 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 JADE3Q92613 823 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MRGPRX1Q96LB2 322 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 DACH2Q96NX9 599 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 NEURL2Q9BR09 285 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 BEX2Q9BXY8 128 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 OR2AG1Q9H205 316 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 WDR41Q9HAD4 459 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 EXD2Q9NVH0 621 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 IL17CQ9P0M4 197 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 GMPR2Q9P2T1 348 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNHIT2Q9UHR6 403 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 SPEGQ15772 3267 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 A0A096LPK6 155 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 KANSL1LA0AUZ9 987 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 M0R3G1 203 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MAN2B1O00754 1011 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms