RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 LRRD1A4D1F6 860 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 USP1O94782 785 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 UNC5CO95185 931 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 CRYABP02511 175 aaKnown RBP13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 CHRM5P08912 532 aaPredicted RBP13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 GSTM1P09488 218 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 ATXN8OSP0DMR3 200 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 ATP1B2P14415 290 aaPredicted RBP13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 CD1EP15812 388 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 NFKB1P19838 968 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 FDXRP22570 491 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 KRTAP10-9P60411 292 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 TMPRSS15P98073 1019 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 GSTM4Q03013 218 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 RBPJQ06330 500 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 MPP3Q13368 585 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 STX1AQ16623 288 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 YOD1Q5VVQ6 348 aaPredicted RBP13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 ZNF449Q6P9G9 518 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 NPNTQ6UXI9 565 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 UNC5AQ6ZN44 842 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 PHC3Q8NDX5 983 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 SYN2Q92777 582 aaPredicted RBP13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 HAS2Q92819 552 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 FCRL5Q96RD9 977 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 SPOCK3Q9BQ16 436 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 C19orf43Q9BQ61 176 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 EURLQ9NYK6 297 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 SEC14L3Q9UDX4 400 aa13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 ANKHD1Q8IWZ3 2542 aaKnown RBP13.67□□□□□ -0.22
PRPF40A-211ENST00000493468 IGLV3-16A0A075B6K0 115 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 A0A087X0T9 212 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 VSTM2BA6NLU5 285 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 C2orf81A6NN90 581 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 DSCR3O14972 297 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 FAM228BP0C875 321 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 ALAS2P22557 587 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 PDHA2P29803 388 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 SMSP52788 366 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 CASP6P55212 293 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 ADORA2A-AS1P86434 159 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 XIAPP98170 497 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 FANCCQ00597 558 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 WASHC5Q12768 1159 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 PRKG2Q13237 762 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 PTPRCAPQ14761 206 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 TAF1AQ15573 450 aaPredicted RBP13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 ALKBH5Q6P6C2 394 aaKnown RBP13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 TTLL10Q6ZVT0 673 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 BZW1Q7L1Q6 419 aaKnown RBP13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 ACBD4Q8NC06 268 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 MTFMTQ96DP5 389 aaKnown RBP13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 OXNAD1Q96HP4 312 aaPredicted RBP13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 COPS8Q99627 209 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 MAK16Q9BXY0 300 aaKnown RBP13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 MCCC2Q9HCC0 563 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 SPHK1Q9NYA1 384 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 IL1RAPL1Q9NZN1 696 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 FKBPLQ9UIM3 349 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 CRLS1Q9UJA2 301 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 ARL5AQ9Y689 179 aa13.66□□□□□ -0.22
PRPF40A-211ENST00000493468 C5orf60A6NFR6 353 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 C19orf84I3L1E1 186 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 MST1P26927 711 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 NR2C2P49116 596 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 CARSP49589 748 aaKnown RBP13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 KIR2DS3Q14952 304 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 FILIP1LQ4L180 1135 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 SASS6Q6UVJ0 657 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 KBTBD2Q8IY47 623 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 IPMKQ8NFU5 416 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 OR4K2Q8NGD2 314 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 CHTF18Q8WVB6 975 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 TFB1MQ8WVM0 346 aaKnown RBP13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 PSMF1Q92530 271 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 VAT1Q99536 393 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 FSD1LQ9BXM9 530 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 RNF32Q9H0A6 362 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 SOX17Q9H6I2 414 aaPredicted RBP13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 CHMP5Q9NZZ3 219 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 CTTNBP2NLQ9P2B4 639 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 CTSFQ9UBX1 484 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 POLG2Q9UHN1 485 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 NENFQ9UMX5 172 aa13.65□□□□□ -0.22
PRPF40A-211ENST00000493468 A0A1W2PQ72 361 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 MAP2K7O14733 419 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 RASAL1O95294 804 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 CLDN14O95500 239 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 SERPING1P05155 500 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 ACPPP15309 386 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 ITGALP20701 1170 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 KIR3DL1P43629 444 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 NLRP9Q7RTR0 991 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 SNX20Q7Z614 316 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 FAM20CQ8IXL6 584 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 TBC1D21Q8IYX1 336 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 OR5AR1Q8NGP9 310 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 CCDC110Q8TBZ0 833 aa13.64□□□□□ -0.23
PRPF40A-211ENST00000493468 CRB3Q9BUF7 120 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms