RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ADGRG5Q8IZF4 528 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 L3MBTL4Q8NA19 623 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 WRAP53Q9BUR4 548 aaKnown RBP20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 COQ10BQ9H8M1 238 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 DNAJC11Q9NVH1 559 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 FAM8A1Q9UBU6 413 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 SLC22A14Q9Y267 594 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 NEUROG3Q9Y4Z2 214 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 AK5Q9Y6K8 562 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 ZFC3H1O60293 1989 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-208ENST00000492980 TCF20Q9UGU0 1960 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-208ENST00000492980 OTOL1A6NHN0 477 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 PSMD11O00231 422 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 WNT9AO14904 365 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 NFATC1O95644 943 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 PRNPP04156 253 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 FXNQ16595 210 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 TBCELQ5QJ74 424 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 SELENOMQ8WWX9 145 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 FBXL8Q96CD0 374 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 COQ10AQ96MF6 247 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 PPM1MQ96MI6 270 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 ASB16Q96NS5 453 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 DPY30Q9C005 99 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 SNX6Q9UNH7 406 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 USP22Q9UPT9 525 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 AURKCQ9UQB9 309 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 LRRK1Q38SD2 2015 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 TCRBV5S2A0A599 114 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 H0YJX3 145 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 PRAMEF4O60810 478 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 HLA-EP13747 358 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 NCK1P16333 377 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 ITPKAP23677 461 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 PSMA4P25789 261 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 HTR1EP28566 365 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 OXTRP30559 389 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 PRLHRP49683 370 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 CHN2P52757 468 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 SELPLGQ14242 412 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 USP39Q53GS9 565 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 PRAMEF9Q5VWM5 478 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 ANKFN1Q8N957 763 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 GLB1L3Q8NCI6 653 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 SLC13A3Q8WWT9 602 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 PPWD1Q96BP3 646 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 DTD2Q96FN9 168 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 CGREF1Q99674 301 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 ATG10Q9H0Y0 220 aa20.57■□□□□ 0.88
CCDC88B-208ENST00000492980 ARHGEF33A8MVX0 844 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 AKAP10O43572 662 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 PSIP1O75475 530 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 BMP2P12643 396 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 PFN3P60673 137 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 TMEM115Q12893 351 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 FAM174BQ3ZCQ3 159 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 SYTL3Q4VX76 610 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 FNDC3BQ53EP0 1204 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 C6orf52Q5T4I8 152 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 C9orf64Q5T6V5 341 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 PHC3Q8NDX5 983 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 GLMNQ92990 594 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 ARRDC3Q96B67 414 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 ELOVL6Q9H5J4 265 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 CLMPQ9H6B4 373 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 UBAP1Q9NZ09 502 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 INPP4BO15327 924 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 HNRNPRO43390 633 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 ATG13O75143 517 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 PAPLNO95428 1278 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 GPIP06744 558 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 BCKDHAP12694 445 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 ABRQ12979 859 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 HNRNPA1L2Q32P51 320 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 KRTCAP2Q8N6L1 136 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 VN1R2Q8NFZ6 395 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 SMARCD2Q92925 531 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 ZNF597Q96LX8 424 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 DEC1Q9P2X7 70 aa20.56■□□□□ 0.88
CCDC88B-208ENST00000492980 SLC5A10A0PJK1 596 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 H0Y858 1186 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 IL10P22301 178 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 HRH2P25021 359 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 ITGB7P26010 798 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 PREPP48147 710 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 NEK2P51955 445 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 OR4D2P58180 307 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 MTPNP58546 118 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 KCNC3Q14003 757 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 NRF1Q16656 503 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 SPANXN4Q5MJ08 99 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 RALGPS2Q86X27 583 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 LILRA3Q8N6C8 439 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 TMIEQ8NEW7 156 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 ST13P5Q8NFI4 369 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 PIP4K2CQ8TBX8 421 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 GTF2H4Q92759 462 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 TMEM159Q96B96 161 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 CCM2Q9BSQ5 444 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms