RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 KLHL33A6NCF5 533 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 PRR5-ARHGAP8B1AHC4 643 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 K7EPI3 171 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 PPP6CO00743 305 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CHUKO15111 745 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CRCPO75575 148 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CHEK2O96017 543 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 OTCP00480 354 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 UROSP10746 265 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 ESRRAP11474 423 aaPredicted RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 ZNF8P17098 575 aaPredicted RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 ITPKAP23677 461 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 ADSLP30566 484 aaPredicted RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 HSPA7P48741 367 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 ARHGAP8P85298 464 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 UBAP2LQ14157 1087 aaKnown RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 FGL2Q14314 439 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 SYVN1Q86TM6 617 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 TREML1Q86YW5 311 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 ZNF547Q8IVP9 402 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CPSF7Q8N684 471 aaKnown RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 OR2L2Q8NH16 312 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 ESAMQ96AP7 390 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 C19orf60Q96EN9 201 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 PPP1R36Q96LQ0 422 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 FOPNLQ96NB1 174 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 SLC17A9Q9BYT1 436 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CXorf56Q9H5V9 222 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 WDR26Q9H7D7 661 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 TAGLN3Q9UI15 199 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 DNAJC15Q9Y5T4 150 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 DNMT3AQ9Y6K1 912 aaPredicted RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 MGAT4DA6NG13 374 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 H3BM21 787 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 MAP3K13O43283 966 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 STK16O75716 305 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CATP04040 527 aaKnown RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 MAP4P27816 1152 aaKnown RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 PBLDP30039 288 aaPredicted RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 INPP5AQ14642 412 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 NXNQ6DKJ4 435 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 LRRC70Q7Z2Q7 622 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 TEX9Q8N6V9 391 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 TWIST2Q8WVJ9 160 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 PIGKQ92643 395 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CCT7Q99832 543 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 ZNF385DQ9H6B1 395 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 MBNL1Q9NR56 388 aaKnown RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 PHPT1Q9NRX4 125 aaPredicted RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 GULP1Q9UBP9 304 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CDV3Q9UKY7 258 aaKnown RBP12.4□□□□□ -0.42
NELFE-209ENST00000488426 ANGPTL3Q9Y5C1 460 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 PCDHGA5Q9Y5G8 931 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 CAPN7Q9Y6W3 813 aa12.4□□□□□ -0.42
NELFE-209ENST00000488426 ASCC3Q8N3C0 2202 aaKnown RBP12.4□□□□□ -0.43
NELFE-209ENST00000488426 TPRP12270 2363 aaKnown RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 ZFC3H1O60293 1989 aaKnown RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 WDFY3Q8IZQ1 3526 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3DA0A087WVF3 549 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3IA0A087WXS9 549 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3EA0A087X179 549 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3KA0A087X1G2 549 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 LNP1A1A4G5 178 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3FA6NER0 549 aaPredicted RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3LB9A6J9 549 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 OR7A17O14581 309 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 TM4SF5O14894 197 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 CCNT2O60583 730 aaKnown RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 VPS4BO75351 444 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 KATNA1O75449 491 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 POP7O75817 140 aaKnown RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 PAK4O96013 591 aaPredicted RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 ENO1P06733 434 aaKnown RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3HP0C7X1 549 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 MYCLP1P12525 358 aaPredicted RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 PTPN4P29074 926 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 PRDX6P30041 224 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 PREPP48147 710 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 FOXA1P55317 472 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 RPA4Q13156 261 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 C18orf21Q32NC0 220 aaPredicted RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 AASDHQ4L235 1098 aaPredicted RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3GQ6DHY5 549 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3CQ6IPX1 549 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 KIAA1324Q6UXG2 1013 aaKnown RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 CHSY3Q70JA7 882 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 LRRTM4Q86VH4 590 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 TBC1D3Q8IZP1 549 aaPredicted RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 OXR1Q8N573 874 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 FBXO15Q8NCQ5 510 aaPredicted RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 FBXL8Q96CD0 374 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 SLC7A6OSQ96CW6 309 aaPredicted RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 DPEP2Q9H4A9 486 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 SLC32A1Q9H598 525 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 NOL11Q9H8H0 719 aaKnown RBP12.39□□□□□ -0.43
NELFE-209ENST00000488426 IPPKQ9H8X2 491 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 FAM8A1Q9UBU6 413 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 ZNF225Q9UK10 706 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 CACNA1EQ15878 2313 aa12.39□□□□□ -0.43
NELFE-209ENST00000488426 PLXND1Q9Y4D7 1925 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms