RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PAPD5Q8NDF8 572 aaKnown RBP3.35□□□□□ -1.87
VPS41-213ENST00000485955 NPEPL1Q8NDH3 523 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 FAM222BQ8WU58 562 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 DYRK2Q92630 601 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 FAM120BQ96EK7 910 aaKnown RBP3.35□□□□□ -1.87
VPS41-213ENST00000485955 FUCA2Q9BTY2 467 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 NUP85Q9BW27 656 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 ERAP1Q9NZ08 941 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 PTRH2Q9Y3E5 179 aaKnown RBP3.35□□□□□ -1.87
VPS41-213ENST00000485955 A6NCN8 305 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ANKUB1A6NFN9 424 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ZNF195O14628 629 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 PRAMEF11O60813 436 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ZBED4O75132 1171 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 DFFBO76075 338 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ZSCAN5DPP0CG00 497 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 IGHV4-31P0DP07 118 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 GCH1P30793 250 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 SLC6A6P31641 620 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 HOXD13P35453 343 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ARSEP51690 589 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 PSMC6P62333 389 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 MC1RQ01726 317 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 DRP2Q13474 957 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 SQLEQ14534 574 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 NR1D2Q14995 579 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 SLC25A53Q5H9E4 307 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 SPDYCQ5MJ68 293 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 PLEKHS1Q5SXH7 462 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 DOK6Q6PKX4 331 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 Q6ZRP5 223 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 TMPRSS11FQ6ZWK6 438 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 KIRREL3Q8IZU9 778 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 LSMEM2Q8N112 164 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 EID3Q8N140 333 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 MARVELD2Q8N4S9 558 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ZNRF4Q8WWF5 429 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 AZIN2Q96A70 460 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 CCDC34Q96HJ3 373 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 AGAP3Q96P47 875 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 KRTAP4-4Q9BYR3 166 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 SHARPINQ9H0F6 387 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 GHITMQ9H3K2 345 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 SYNCQ9H7C4 482 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 TBC1D17Q9HA65 648 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 CACNG4Q9UBN1 327 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 DAPK2Q9UIK4 370 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ANGPTL3Q9Y5C1 460 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ARID2Q68CP9 1835 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ITIH6Q6UXX5 1313 aa3.34□□□□□ -1.87
VPS41-213ENST00000485955 ZNF644Q9H582 1327 aaPredicted RBP3.34□□□□□ -1.87
VPS41-213ENST00000485955 COL5A2P05997 1499 aaPredicted RBP3.34□□□□□ -1.88
VPS41-213ENST00000485955 MEX3AA1L020 520 aaKnown RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 RNASEH1O60930 286 aaKnown RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 AVILO75366 819 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 BCL10O95999 233 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 VPREB1P12018 145 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 HOXC13P31276 330 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 PDX1P52945 283 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 SGSM1Q2NKQ1 1148 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 FASTKD1Q53R41 847 aaKnown RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 TCTE1Q5JU00 501 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 KRT79Q5XKE5 535 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 DHRS7BQ6IAN0 325 aaPredicted RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 RTN4RL2Q86UN3 420 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 HOGA1Q86XE5 327 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 CFAP206Q8IYR0 622 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 LYG1Q8N1E2 194 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 C17orf53Q8N3J3 647 aaPredicted RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 RAB42Q8N4Z0 105 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 POC5Q8NA72 575 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 OR11H4Q8NGC9 324 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 OR5AP2Q8NGF4 316 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 PTPMT1Q8WUK0 201 aaPredicted RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 PHLDA1Q8WV24 401 aaPredicted RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 SKA1Q96BD8 255 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 BARD1Q99728 777 aaKnown RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 TRIM51Q9BSJ1 452 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 KIFC3Q9BVG8 833 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 MAK16Q9BXY0 300 aaKnown RBP3.33□□□□□ -1.88
VPS41-213ENST00000485955 OSGEPL1Q9H4B0 414 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 SERINC1Q9NRX5 453 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 EPHA6Q9UF33 1036 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 WDR37Q9Y2I8 494 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 PCDH11YQ9BZA8 1340 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 SNAPC4Q5SXM2 1469 aa3.33□□□□□ -1.88
VPS41-213ENST00000485955 LOC102723996A0A087X1L8 192 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 A0A0U1RQG5 324 aaPredicted RBP3.32□□□□□ -1.88
VPS41-213ENST00000485955 TMEM221A6NGB7 291 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 ANKRD61A6NGH8 418 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 SERINC4A6NH21 518 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 TOMM70O94826 608 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 DDHD2O94830 711 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 CENPBP07199 599 aaPredicted RBP3.32□□□□□ -1.88
VPS41-213ENST00000485955 SMIM18P0DKX4 95 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 HSPA8P11142 646 aaKnown RBP3.32□□□□□ -1.88
VPS41-213ENST00000485955 GATA1P15976 413 aaPredicted RBP3.32□□□□□ -1.88
VPS41-213ENST00000485955 GATA2P23769 480 aaPredicted RBP3.32□□□□□ -1.88
VPS41-213ENST00000485955 LEPRP48357 1165 aaKnown RBP3.32□□□□□ -1.88
VPS41-213ENST00000485955 NRIP1P48552 1158 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 174.4 ms