RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ZBTB2Q8N680 514 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 PPHLN1Q8NEY8 458 aaKnown RBP20.8■□□□□ 0.92
USP40-215ENST00000484528 TCTN2Q96GX1 697 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 TSGA10Q9BZW7 698 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 IRAK4Q9NWZ3 460 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 OR6C2Q9NZP2 312 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 MARCH4Q9P2E8 410 aaPredicted RBP20.8■□□□□ 0.92
USP40-215ENST00000484528 RIMKLBQ9ULI2 386 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 KLHL20Q9Y2M5 609 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 TTLL8A6PVC2 850 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 H3BMH7 237 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 ZNF185O15231 689 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 KRT86O43790 486 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 HBQ1P09105 142 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 AGXTP21549 392 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 OTX2P32243 289 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 RPL22P35268 128 aaKnown RBP20.79■□□□□ 0.92
USP40-215ENST00000484528 SESN2P58004 480 aaPredicted RBP20.79■□□□□ 0.92
USP40-215ENST00000484528 FOXL2P58012 376 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 PLOD1Q02809 727 aaPredicted RBP20.79■□□□□ 0.92
USP40-215ENST00000484528 SRSF1Q07955 248 aaKnown RBP eCLIP20.79■□□□□ 0.92
USP40-215ENST00000484528 RAPSNQ13702 412 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 MLIPQ5VWP3 458 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 ATCAYQ86WG3 371 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 SLC22A15Q8IZD6 547 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 ZNF655Q8N720 491 aaPredicted RBP20.79■□□□□ 0.92
USP40-215ENST00000484528 COL26A1Q96A83 441 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 IL17FQ96PD4 163 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 AP1M1Q9BXS5 423 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 MLXIPLQ9NP71 852 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 CHRAC1Q9NRG0 131 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 LUZP4Q9P127 313 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 PAK5Q9P286 719 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 ANKMY1Q9P2S6 941 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 DHCR7Q9UBM7 475 aaKnown RBP20.79■□□□□ 0.92
USP40-215ENST00000484528 CDYLQ9Y232 598 aa20.79■□□□□ 0.92
USP40-215ENST00000484528 PKLRP30613 574 aa20.78■□□□□ 0.92
USP40-215ENST00000484528 RPS6KA1Q15418 735 aa20.78■□□□□ 0.92
USP40-215ENST00000484528 SIX1Q15475 284 aaPredicted RBP20.78■□□□□ 0.92
USP40-215ENST00000484528 FDCSPQ8NFU4 85 aa20.78■□□□□ 0.92
USP40-215ENST00000484528 DPH2Q9BQC3 489 aaPredicted RBP20.78■□□□□ 0.92
USP40-215ENST00000484528 NUDT9Q9BW91 350 aa20.78■□□□□ 0.92
USP40-215ENST00000484528 CATSPERZQ9NTU4 200 aa20.78■□□□□ 0.92
USP40-215ENST00000484528 ANAPC5Q9UJX4 755 aa20.78■□□□□ 0.92
USP40-215ENST00000484528 PADI2Q9Y2J8 665 aa20.78■□□□□ 0.92
USP40-215ENST00000484528 ESPL1Q14674 2120 aa20.78■□□□□ 0.92
USP40-215ENST00000484528 UTP20O75691 2785 aaKnown RBP20.78■□□□□ 0.92
USP40-215ENST00000484528 NUP210LQ5VU65 1888 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 GOLGA6L6A8MZA4 724 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 F8W8V4 182 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 ZSCAN9O15535 394 aaPredicted RBP20.77■□□□□ 0.92
USP40-215ENST00000484528 MAGP20916 626 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 UQCRFS1P47985 274 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 CD97P48960 835 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 SLC5A12Q1EHB4 618 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 DNAJC21Q5F1R6 531 aaKnown RBP20.77■□□□□ 0.92
USP40-215ENST00000484528 MEI1Q5TIA1 1274 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 NLRP9Q7RTR0 991 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 RAB43Q86YS6 212 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 TMEM151BQ8IW70 566 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 LINC01555Q8NAE3 123 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 ASZ1Q8WWH4 475 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 GBP5Q96PP8 586 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 TSSK1BQ9BXA7 367 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 MFRPQ9BY79 579 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 GPN3Q9UHW5 284 aaPredicted RBP20.77■□□□□ 0.92
USP40-215ENST00000484528 PTRH2Q9Y3E5 179 aaKnown RBP20.77■□□□□ 0.92
USP40-215ENST00000484528 AP1M2Q9Y6Q5 423 aa20.77■□□□□ 0.92
USP40-215ENST00000484528 KDM1AO60341 852 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 GPC4O75487 556 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 KLF7O75840 302 aaPredicted RBP20.76■□□□□ 0.91
USP40-215ENST00000484528 CEACAM4O75871 244 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 APOA4P06727 396 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 PPARGP37231 505 aaPredicted RBP20.76■□□□□ 0.91
USP40-215ENST00000484528 RAB28P51157 221 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 BASP1P80723 227 aaKnown RBP20.76■□□□□ 0.91
USP40-215ENST00000484528 KIR2DS3Q14952 304 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 KYNUQ16719 465 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 AARS2Q5JTZ9 985 aaKnown RBP20.76■□□□□ 0.91
USP40-215ENST00000484528 PAPD7Q5XG87 772 aaKnown RBP20.76■□□□□ 0.91
USP40-215ENST00000484528 RHBDD2Q6NTF9 364 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 MRGPREQ86SM8 312 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 DNAJC22Q8N4W6 341 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 EFCAB3Q8N7B9 438 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 CPT1CQ8TCG5 803 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 CARD6Q9BX69 1037 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 LZTFL1Q9NQ48 299 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 TXLNGQ9NUQ3 528 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 ICE1Q9Y2F5 2266 aa20.76■□□□□ 0.91
USP40-215ENST00000484528 CLEC18AA5D8T8 446 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 KRT87PA6NCN2 255 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 PRMT5O14744 637 aaPredicted RBP20.75■□□□□ 0.91
USP40-215ENST00000484528 CD3EAPO15446 510 aaKnown RBP20.75■□□□□ 0.91
USP40-215ENST00000484528 GRB7Q14451 532 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 TMED2Q15363 201 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 PCID2Q5JVF3 399 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 PTRHD1Q6GMV3 140 aaKnown RBP20.75■□□□□ 0.91
USP40-215ENST00000484528 CLEC18BQ6UXF7 455 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 DCUN1D3Q8IWE4 304 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 OTUD6BQ8N6M0 293 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms