RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PCDH11YQ9BZA8 1340 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 HEG1Q9ULI3 1381 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 IGLV5-37A0A075B6J1 123 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 A0A0G2JNG1 304 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 CTAGE9A4FU28 777 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 C19orf81C9J6K1 198 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 ZNF587BE7ETH6 402 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 PROB1E7EW31 1015 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 PGRMC2O15173 223 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 ATP6AP2O75787 350 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 GH1P01241 217 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 C9P02748 559 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 INHBAP08476 426 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 CTAGE8P0CG41 777 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 HAPLN1P10915 354 aaPredicted RBP4.87□□□□□ -1.63
UPF3B-203ENST00000478840 PSMB4P28070 264 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 AHRP35869 848 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 RPL21P46778 160 aaKnown RBP4.87□□□□□ -1.63
UPF3B-203ENST00000478840 CDX1P47902 265 aaPredicted RBP4.87□□□□□ -1.63
UPF3B-203ENST00000478840 PEX5P50542 639 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 PLCD1P51178 756 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 MLLT10P55197 1068 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 MTCP1P56278 107 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 ARF5P84085 180 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 EEF1A2Q05639 463 aaKnown RBP4.87□□□□□ -1.63
UPF3B-203ENST00000478840 MYBPHQ13203 477 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 GTF2H2Q13888 395 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 KIR2DS5Q14953 304 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 ETFDHQ16134 617 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 PARP10Q53GL7 1025 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 C11orf87Q6NUJ2 197 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 GTF2H2CQ6P1K8 395 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 CASC4Q6P4E1 433 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 RHBDF2Q6PJF5 856 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 CNSTQ6PJW8 725 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 PLXDC2Q6UX71 529 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 KCTD9Q7L273 389 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 CNTN4Q8IWV2 1026 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 CTAGE4Q8IX94 777 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 GPALPP1Q8IXQ4 340 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 TRIML1Q8N9V2 468 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 VANGL1Q8TAA9 524 aaPredicted RBP4.87□□□□□ -1.63
UPF3B-203ENST00000478840 CCDC107Q8WV48 283 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 BSCL2Q96G97 398 aaPredicted RBP4.87□□□□□ -1.63
UPF3B-203ENST00000478840 TMEM19Q96HH6 336 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 SGK494Q96LW2 274 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 ZNF385AQ96PM9 386 aaKnown RBP4.87□□□□□ -1.63
UPF3B-203ENST00000478840 Q9H8V8 135 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 ELOVL5Q9NYP7 299 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 MOSPD1Q9UJG1 213 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 FBXL5Q9UKA1 691 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 APPL1Q9UKG1 709 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 MYO6Q9UM54 1294 aa4.87□□□□□ -1.63
UPF3B-203ENST00000478840 SPAG9O60271 1321 aaKnown RBP4.87□□□□□ -1.63
UPF3B-203ENST00000478840 TRAV24A0A0B4J272 114 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PPIP5K2O43314 1243 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PDE9AO76083 593 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PMS2P2O95744 297 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 TFAP2AP05549 437 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 SMIM18P0DKX4 95 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 HLA-DOBP13765 273 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 VCLP18206 1134 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 LBPP18428 481 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 NR4A2P43354 598 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 INHBEP58166 350 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 STARD6P59095 220 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 ISL1P61371 349 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 SLC20A2Q08357 652 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 NPRL3Q12980 569 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 CBX3Q13185 183 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 SLC39A14Q15043 492 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 HLFQ16534 295 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PTGISQ16647 500 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 CA9Q16790 459 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 LACTB2Q53H82 288 aaPredicted RBP4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PACS1Q6VY07 963 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 SATL1Q86VE3 508 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 FOXP4Q8IVH2 680 aaPredicted RBP4.86□□□□□ -1.63
UPF3B-203ENST00000478840 ODF3L1Q8IXM7 274 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 RTL3Q8N8U3 475 aaKnown RBP4.86□□□□□ -1.63
UPF3B-203ENST00000478840 NPEPL1Q8NDH3 523 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PSMA8Q8TAA3 256 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 FGFBP3Q8TAT2 258 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 CDCA5Q96FF9 252 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 ABHD8Q96I13 439 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 IL25Q9H293 177 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 SRD5A3Q9H8P0 318 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PNPLA3Q9NST1 481 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 CYP39A1Q9NYL5 469 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 TXNDC16Q9P2K2 825 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PCDHA7Q9UN72 937 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 PA2G4Q9UQ80 394 aaKnown RBP4.86□□□□□ -1.63
UPF3B-203ENST00000478840 TRIM17Q9Y577 477 aa4.86□□□□□ -1.63
UPF3B-203ENST00000478840 A0A1W2PPW3 197 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 CASTOR2A6NHX0 329 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 SRRM3A6NNA2 597 aaPredicted RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 INO80B-WBP1J3KQ70 363 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 RTCAO00442 366 aaKnown RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 FLRT2O43155 660 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 LIPFP07098 398 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms