RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 B3GNT6Q6ZMB0 384 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 COX15Q7KZN9 410 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 GALNTL5Q7Z4T8 443 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 WDR53Q7Z5U6 358 aaPredicted RBP7.66□□□□□ -1.18
USP54-211ENST00000474929 FGD2Q7Z6J4 655 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 EMC1Q8N766 993 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 TTC29Q8NA56 475 aaPredicted RBP7.66□□□□□ -1.18
USP54-211ENST00000474929 OR4E2Q8NGC2 313 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 CREB3L4Q8TEY5 395 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 RXFP2Q8WXD0 754 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 RNASE6Q93091 150 aaKnown RBP7.66□□□□□ -1.18
USP54-211ENST00000474929 POLR1EQ9GZS1 481 aaKnown RBP7.66□□□□□ -1.18
USP54-211ENST00000474929 ARFGAP3Q9NP61 516 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 SAMSN1Q9NSI8 373 aaKnown RBP7.66□□□□□ -1.18
USP54-211ENST00000474929 RMND1Q9NWS8 449 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 CTSFQ9UBX1 484 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 LPAR3Q9UBY5 353 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 PSMD13Q9UNM6 376 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 ANKRD62A6NC57 917 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 C2CD4BA6NLJ0 364 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 EEF2KO00418 725 aaKnown RBP7.65□□□□□ -1.18
USP54-211ENST00000474929 BTN3A1O00481 513 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 WISP2O76076 250 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 SP1P08047 785 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 PDHA1P08559 390 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 ACVR2AP27037 513 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 PTGER1P34995 402 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 MMP13P45452 471 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 GCGRP47871 477 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 GABRA4P48169 554 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 TMEM115Q12893 351 aaPredicted RBP7.65□□□□□ -1.18
USP54-211ENST00000474929 TUBA3CQ13748 450 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 GSE1Q14687 1217 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 DEFB110Q30KQ9 67 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 FAM214AQ32MH5 1076 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 FBXL19-AS1Q494R0 122 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 ACER2Q5QJU3 275 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 MARC1Q5VT66 337 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 METRNLQ641Q3 311 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.65□□□□□ -1.18
USP54-211ENST00000474929 TUBA3EQ6PEY2 450 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 KDELC1Q6UW63 502 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 SHISA6Q6ZSJ9 500 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 LGI4Q8N135 537 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 PYROXD2Q8N2H3 581 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 GDAP1Q8TB36 358 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 STT3BQ8TCJ2 826 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 C8orf44Q96CB5 159 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 NSMCE3Q96MG7 304 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 CCL19Q99731 98 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 CCM2Q9BSQ5 444 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 TDRD1Q9BXT4 1180 aaKnown RBP7.65□□□□□ -1.18
USP54-211ENST00000474929 GSX2Q9BZM3 304 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 ACTR10Q9NZ32 417 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 FZD10Q9ULW2 581 aa7.65□□□□□ -1.18
USP54-211ENST00000474929 CFAP20Q9Y6A4 193 aaKnown RBP7.65□□□□□ -1.18
USP54-211ENST00000474929 A0A0J9YY10 115 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 TTC24A2A3L6 582 aaPredicted RBP7.64□□□□□ -1.19
USP54-211ENST00000474929 OR14I1A6ND48 311 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 DVL2O14641 736 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 BCKDKO14874 412 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 CD5LO43866 347 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 KDM1AO60341 852 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 NME2P1O60361 137 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 CDC40O60508 579 aaKnown RBP eCLIP7.64□□□□□ -1.19
USP54-211ENST00000474929 TMCC2O75069 709 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 CYC1P08574 325 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 ZGLP1P0C6A0 271 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 ITGAMP11215 1152 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 TFEBP19484 476 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 GPD1P21695 349 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 NME2P22392 152 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 PPP1R2P41236 205 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 TMPRSS15P98073 1019 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 OC90Q02509 493 aaPredicted RBP7.64□□□□□ -1.19
USP54-211ENST00000474929 STIM1Q13586 685 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 ZNF648Q5T619 568 aaPredicted RBP7.64□□□□□ -1.19
USP54-211ENST00000474929 ZDHHC20Q5W0Z9 365 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 ALS2CLQ60I27 953 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 SLC25A25Q6KCM7 469 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 SCYL2Q6P3W7 929 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 TRIM65Q6PJ69 517 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.64□□□□□ -1.19
USP54-211ENST00000474929 AMIGO1Q86WK6 493 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 BEST3Q8N1M1 668 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 VWA5B2Q8N398 1253 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 ATPAF2Q8N5M1 289 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 SLC5A8Q8N695 610 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 PPM1NQ8N819 430 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 LPCAT1Q8NF37 534 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 TMEM125Q96AQ2 219 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 PERPQ96FX8 193 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 SRPK1Q96SB4 655 aaKnown RBP7.64□□□□□ -1.19
USP54-211ENST00000474929 INSM2Q96T92 566 aaPredicted RBP7.64□□□□□ -1.19
USP54-211ENST00000474929 C11orf70Q9BRQ4 267 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 TTYH2Q9BSA4 534 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 ADGRE3Q9BY15 652 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 WWP1Q9H0M0 922 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 ZNF700Q9H0M5 742 aa7.64□□□□□ -1.19
USP54-211ENST00000474929 TFB2MQ9H5Q4 396 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms