RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PKLRP30613 574 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 CD97P48960 835 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 PGDP52209 483 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 MLLT10P55197 1068 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 PRAMEP78395 509 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 CRADDP78560 199 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 RPS6KA1Q15418 735 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 FASTKD1Q53R41 847 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 DNAJC21Q5F1R6 531 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 PAPD7Q5XG87 772 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 LDB1Q86U70 411 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 GPR135Q8IZ08 494 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 PPHLN1Q8NEY8 458 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 UBE2Q2Q8WVN8 375 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 TTC1Q99614 292 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 SLC25A23Q9BV35 468 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 EIF2B3Q9NR50 452 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 CHRAC1Q9NRG0 131 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 ANKRD12Q6UB98 2062 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 KLF7O75840 302 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 HBQ1P09105 142 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 RAB28P51157 221 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 CCL11P51671 97 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 HSPA14Q0VDF9 509 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 GRB7Q14451 532 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 KIR2DS3Q14952 304 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 CCNG2Q16589 344 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 SLC5A12Q1EHB4 618 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 RHBDD2Q6NTF9 364 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 DRICH1Q6PGQ1 229 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 HOOK3Q86VS8 718 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 FAM20CQ8IXL6 584 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 ZBTB2Q8N680 514 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 GBP5Q96PP8 586 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 CARD6Q9BX69 1037 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 SPRTNQ9H040 489 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 TREX1Q9NSU2 369 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 CATSPERZQ9NTU4 200 aa18.12■□□□□ 0.49
CCDC88B-206ENST00000473405 C9J4A7 227 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 ZSCAN9O15535 394 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 CBSLP0DN79 551 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 AOAHP28039 575 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 CBSP35520 551 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 SESN2P58004 480 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 SRSF1Q07955 248 aaKnown RBP eCLIP18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 ATP1A4Q13733 1029 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 KYNUQ16719 465 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 AARS2Q5JTZ9 985 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 PCID2Q5JVF3 399 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 KRT222Q8N1A0 295 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 DNAJC22Q8N4W6 341 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 LMNTD1Q8N9Z9 388 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 ASZ1Q8WWH4 475 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 SLC7A5P2Q9GIP4 190 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 CIDEBQ9UHD4 219 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 AP1M2Q9Y6Q5 423 aa18.11■□□□□ 0.49
CCDC88B-206ENST00000473405 ISM1B1AKI9 464 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 F8W8V4 182 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 PRMT5O14744 637 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 KDM1AO60341 852 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 SLCO2B1O94956 709 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 MAGP20916 626 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 TTPAP49638 278 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 UBAP2LQ14157 1087 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 KCTD19Q17RG1 926 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 NADK2Q4G0N4 442 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 C1orf189Q5VU69 101 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 UNC5DQ6UXZ4 953 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 DCUN1D3Q8IWE4 304 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 FDCSPQ8NFU4 85 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 N4BP2L2Q92802 583 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 DHRS4Q9BTZ2 278 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 NUDT9Q9BW91 350 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 TSSK1BQ9BXA7 367 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 P2RY12Q9H244 342 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 DHCR7Q9UBM7 475 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 DRG1Q9Y295 367 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 PADI2Q9Y2J8 665 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 ZKSCAN5Q9Y2L8 839 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 KLHL20Q9Y2M5 609 aa18.1■□□□□ 0.49
CCDC88B-206ENST00000473405 GOLGA6L6A8MZA4 724 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 CD3EAPO15446 510 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 CNOT3O75175 753 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 SORBS2O94875 1100 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 FGGP02679 453 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 APOA4P06727 396 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 AGXTP21549 392 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 ARNTP27540 789 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 NMBRP28336 390 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 PPARGP37231 505 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 GCGRP47871 477 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 ZNF662Q6ZS27 426 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 MED25Q71SY5 747 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 MRGPREQ86SM8 312 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 ZNF655Q8N720 491 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 TMEM102Q8N9M5 508 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 PROKR1Q8TCW9 393 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 IL17FQ96PD4 163 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 IL22Q9GZX6 179 aa18.09■□□□□ 0.49
CCDC88B-206ENST00000473405 LZTFL1Q9NQ48 299 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms