RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 HSPA12AO43301 675 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 OAZ2O95190 189 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 MAPK14Q16539 360 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 FAM174BQ3ZCQ3 159 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 CRYBG2Q8N1P7 616 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 DNASE1L2Q92874 299 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 FKBP10Q96AY3 582 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ST6GALNAC4Q9H4F1 302 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 TREM1Q9NP99 234 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 FAM86B1E9PN63 330 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 M0R129 80 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 FAM86B2P0C5J1 330 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 CBSLP0DN79 551 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 SRCP12931 536 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 CBSP35520 551 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 JAM2P57087 298 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ANKFN1Q8N957 763 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF709Q8N972 641 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ALG3Q92685 438 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 KXD1Q9BQD3 176 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ZBTB26Q9HCK0 441 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ITM2CQ9NQX7 267 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 KIF13BQ9NQT8 1826 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 USP12O75317 370 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 MAP3K8P41279 467 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 RHDQ02161 417 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 NPTX1Q15818 432 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 CTC1Q2NKJ3 1217 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 SPATA22Q8NHS9 363 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 PIGKQ92643 395 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 AZIN2Q96A70 460 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 TBC1D17Q9HA65 648 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 TTLL8A6PVC2 850 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 TGM6O95932 706 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 HOXC12P31275 282 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 MC4RP32245 332 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 CYP4F8P98187 520 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 NKAPLQ5M9Q1 402 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 FAM171A1Q5VUB5 890 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 IL23RQ5VWK5 629 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 RAET1GQ6H3X3 334 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ELMOD2Q8IZ81 293 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ZBTB2Q8N680 514 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 DNAJC19Q96DA6 116 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 TFB2MQ9H5Q4 396 aaKnown RBP13.07□□□□□ -0.32
COL6A3-209ENST00000472056 SNTG1Q9NSN8 517 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 HCN3Q9P1Z3 774 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 GABRDO14764 452 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 SPAM1P38567 509 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ATP4BP51164 291 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ORC1Q13415 861 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 OGFOD2Q6N063 350 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 BRSK1Q8TDC3 778 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 CNPPD1Q9BV87 410 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 ELP3Q9H9T3 547 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 NDUFAF4Q9P032 175 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 BTRCQ9Y297 605 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 MYPNQ86TC9 1320 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 TRAPPC13A5PLN9 417 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 MPSTP25325 297 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 WNT3AP56704 352 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 LDLRAP1Q5SW96 308 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 C6orf183Q5T699 404 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 GPRC6AQ5T6X5 926 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 TCTEX1D2Q8WW35 142 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 HIST1H2AAQ96QV6 131 aa13.07□□□□□ -0.32
COL6A3-209ENST00000472056 C7orf50Q9BRJ6 194 aaKnown RBP13.07□□□□□ -0.32
COL6A3-209ENST00000472056 TSTD3H0UI37 97 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ACTC1P68032 377 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ACTA1P68133 377 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 CD83Q01151 205 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 C1orf216Q8TAB5 229 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 CEP41Q9BYV8 373 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ATP6AP2O75787 350 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF823P16415 610 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 CDH13P55290 713 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 RAPSNQ13702 412 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 RALGPS1Q5JS13 557 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 SLC22A16Q86VW1 577 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 FAM46DQ8NEK8 389 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 TESCQ96BS2 214 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 C16orf58Q96GQ5 468 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 AGO3Q9H9G7 860 aaKnown RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 FBXO10Q9UK96 956 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 STUB1Q9UNE7 303 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 OR2AG2A6NM03 316 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 KLRC4O43908 158 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ZSCAN5DPP0CG00 497 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 RYKP34925 604 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 MPIP34949 423 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 GPR158Q5T848 1215 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 KIAA0930Q6ICG6 404 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 OR4C15Q8NGM1 316 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 GIMAP5Q96F15 307 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 KIAA1522Q9P206 1035 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 H0Y858 1186 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 INMTO95050 263 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 AZGP1P25311 298 aaKnown RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 PPM1AP35813 382 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 SLC1A5Q15758 541 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms