RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 BTN3A3O00478 584 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 PEX12O00623 359 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 SOCS6O14544 535 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 KMOO15229 486 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 MTA2O94776 668 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 CDK14O94921 469 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 SLC4A1P02730 911 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 HLA-DQB2P05538 268 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 PYGLP06737 847 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 CELA2AP08217 269 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 MMP2P08253 660 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 CD1EP15812 388 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 ITGAXP20702 1163 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 CYP2A7P20853 494 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 CDH3P22223 829 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 PBLDP30039 288 aaPredicted RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 MIPP30301 263 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 FOLR3P41439 243 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 GABRA4P48169 554 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 EPHB1P54762 984 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 GSCP56915 257 aaPredicted RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 LTBQ06643 244 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 TMEM115Q12893 351 aaPredicted RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 ZIC1Q15915 447 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 FXNQ16595 210 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 ERMARDQ5T6L9 678 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 MARC1Q5VT66 337 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 FAM180AQ6UWF9 173 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 KIRREL2Q6UWL6 708 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 TMEM207Q6UWW9 146 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 WASH2PQ6VEQ5 465 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 C3P1Q6ZMU1 363 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 MEX3BQ6ZN04 569 aaKnown RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 KMT5CQ86Y97 462 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 PHF13Q86YI8 300 aaPredicted RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 TGIF2LYQ8IUE0 185 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 TEX26Q8N6G2 289 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 BCORP1Q8N888 145 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 RASGEF1AQ8N9B8 481 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 MSANTD4Q8NCY6 345 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 OR4E2Q8NGC2 313 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 OR2Y1Q8NGV0 311 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 PSMF1Q92530 271 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 LYSMD1Q96S90 227 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 DPH2Q9BQC3 489 aaPredicted RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 TIMM29Q9BSF4 260 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 CNPY3Q9BT09 278 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 NDC1Q9BTX1 674 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 NUP85Q9BW27 656 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 STK33Q9BYT3 514 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 WWP1Q9H0M0 922 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 NDST4Q9H3R1 872 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 DEF6Q9H4E7 631 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 BPIFA1Q9NP55 256 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 NLRC4Q9NPP4 1024 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 DLL4Q9NR61 685 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 CCM2LQ9NUG4 571 aaPredicted RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 IMP3Q9NV31 184 aaKnown RBP5.09□□□□□ -1.59
PTPN4-209ENST00000469511 SLC24A2Q9UI40 661 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 TLN2Q9Y4G6 2542 aa5.09□□□□□ -1.59
PTPN4-209ENST00000469511 NBEAL1Q6ZS30 2694 aa5.09□□□□□ -1.6
PTPN4-209ENST00000469511 ZNF407Q9C0G0 2248 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 EML6Q6ZMW3 1958 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TMEM200CA6NKL6 621 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 OR2AG2A6NM03 316 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 ANKRD66B4E2M5 251 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 C9J4A7 227 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 BTN3A1O00481 513 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 UGT1A9O60656 530 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 POP7O75817 140 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 IPO13O94829 963 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 UBOX5O94941 541 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CLDN14O95500 239 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CD48P09326 243 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 MTHFD1P11586 935 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 UGT1A6P19224 532 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 UGT1A1P22309 533 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 UGT1A4P22310 534 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 PSMA2P25787 234 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 PRDX3P30048 256 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 SOX5P35711 763 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 HSPA9P38646 679 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 HADHAP40939 763 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 AIF1P55008 147 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 JAM2P57087 298 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 AIMP2Q13155 320 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 NOMO1Q15155 1222 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 ASIC2Q16515 512 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 PPP2R5EQ16537 467 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CYP2A13Q16696 494 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 MAN2A1Q16706 1144 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 SKOR2Q2VWA4 1001 aaPredicted RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 ATP13A5Q4VNC0 1218 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 VWA3BQ502W6 1294 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 ANKRD20A8PQ5CZ79 823 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 ZNF569Q5MCW4 686 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TMTC4Q5T4D3 741 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 AGAP7PQ5VUJ5 663 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TMEM198Q66K66 360 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms