RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SLC5A10A0PJK1 596 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 DPM1O60762 260 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 ALAS2P22557 587 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 ACADLP28330 430 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 GRIA1P42261 906 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 RAB28P51157 221 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 DCDP81605 110 aaKnown RBP16.91■□□□□ 0.3
COL7A1-206ENST00000466591 ZNF658BQ4V348 819 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-206ENST00000466591 PCID2Q5JVF3 399 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 FAM69BQ5VUD6 431 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 LCN10Q6JVE6 187 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 TLDC1Q6P9B6 456 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 FAM198BQ6UWH4 519 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 C4orf22Q6V702 233 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 ZNF517Q6ZMY9 492 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-206ENST00000466591 GAS2L3Q86XJ1 694 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 DCUN1D3Q8IWE4 304 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 C2orf73Q8N5S3 287 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-206ENST00000466591 ZNF655Q8N720 491 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-206ENST00000466591 CLEC1AQ8NC01 280 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 PROKR1Q8TCW9 393 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 FOPNLQ96NB1 174 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 IP6K3Q96PC2 410 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 OR2A14Q96R47 310 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 AP1M1Q9BXS5 423 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 CASS4Q9NQ75 786 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 SPHK1Q9NYA1 384 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 BFARQ9NZS9 450 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 CIDEBQ9UHD4 219 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 PLCL2Q9UPR0 1127 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 MRFAP1Q9Y605 127 aa16.91■□□□□ 0.3
COL7A1-206ENST00000466591 BHMG1C9JSJ3 638 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-206ENST00000466591 PRMT5O14744 637 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-206ENST00000466591 KPNA5O15131 536 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 CD3EAPO15446 510 aaKnown RBP16.9■□□□□ 0.3
COL7A1-206ENST00000466591 IGHEP01854 428 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 CCDC175P0C221 793 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 TERF1P54274 439 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 ATP1A4Q13733 1029 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 SLC9A5Q14940 896 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 SF1Q15637 639 aaKnown RBP16.9■□□□□ 0.3
COL7A1-206ENST00000466591 SLC5A12Q1EHB4 618 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 ZNF789Q5FWF6 425 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 OTOAQ7RTW8 1153 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 SDCCAG8Q86SQ7 713 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-206ENST00000466591 LDB1Q86U70 411 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-206ENST00000466591 SLC22A15Q8IZD6 547 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 CPT1CQ8TCG5 803 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 DENND1AQ8TEH3 1009 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 DLG3Q92796 817 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 PEX13Q92968 403 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 FER1L6-AS2Q96M78 137 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 CARD6Q9BX69 1037 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 RAB11FIP5Q9BXF6 653 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 IL22Q9GZX6 179 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 SPRTNQ9H040 489 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-206ENST00000466591 FAM60AQ9NP50 221 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 CHRAC1Q9NRG0 131 aa16.9■□□□□ 0.3
COL7A1-206ENST00000466591 ASH1LQ9NR48 2969 aaKnown RBP16.89■□□□□ 0.3
COL7A1-206ENST00000466591 SETXQ7Z333 2677 aaKnown RBP16.89■□□□□ 0.29
COL7A1-206ENST00000466591 IQCF5A8MTL0 148 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 KLHL41O60662 606 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 PDGFAP04085 211 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 ALPPP05187 535 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 ZSCAN5DPP0CG00 497 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 CCR7P32248 378 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 EIF3BP55884 814 aaKnown RBP16.89■□□□□ 0.29
COL7A1-206ENST00000466591 SARNPP82979 210 aaKnown RBP16.89■□□□□ 0.29
COL7A1-206ENST00000466591 RAPSNQ13702 412 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 CCNG2Q16589 344 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 CYP2A13Q16696 494 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 NADK2Q4G0N4 442 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 MEI1Q5TIA1 1274 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 UNC5DQ6UXZ4 953 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 KRT222Q8N1A0 295 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 FAM26EQ8N5C1 309 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 MIB2Q96AX9 1013 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 ZNF778Q96MU6 729 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 MFRPQ9BY79 579 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 DHCR7Q9UBM7 475 aaKnown RBP16.89■□□□□ 0.29
COL7A1-206ENST00000466591 TSR3Q9UJK0 312 aaKnown RBP16.89■□□□□ 0.29
COL7A1-206ENST00000466591 PCDHGB7Q9Y5F8 929 aa16.89■□□□□ 0.29
COL7A1-206ENST00000466591 S1PR4O95977 384 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 FGGP02679 453 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 CBSLP0DN79 551 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 PIM1P11309 404 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-206ENST00000466591 MAGP20916 626 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 CD9P21926 228 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 PSMA3P25788 255 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 PKLRP30613 574 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 RPL22P35268 128 aaKnown RBP16.88■□□□□ 0.29
COL7A1-206ENST00000466591 CBSP35520 551 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 NPY2RP49146 381 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 ARSFP54793 590 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 CRADDP78560 199 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 SSPNQ14714 243 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 ZC3H12BQ5HYM0 836 aaKnown RBP16.88■□□□□ 0.29
COL7A1-206ENST00000466591 IRAK1BP1Q5VVH5 260 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 MRNIPQ6NTE8 343 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 RHBDD2Q6NTF9 364 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms