RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 UNC5AQ6ZN44 842 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 KIAA0408Q6ZU52 694 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 TIPARPQ7Z3E1 657 aaKnown RBP16.79■□□□□ 0.28
USP39-208ENST00000455732 BPHLQ86WA6 291 aaPredicted RBP16.79■□□□□ 0.28
USP39-208ENST00000455732 CACNA2D3Q8IZS8 1091 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 ZBTB2Q8N680 514 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 IL22RA1Q8N6P7 574 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 CERS2Q96G23 380 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 CCDC68Q9H2F9 335 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 IARS2Q9NSE4 1012 aaKnown RBP16.79■□□□□ 0.28
USP39-208ENST00000455732 ACTR10Q9NZ32 417 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 ZC3H7BQ9UGR2 993 aaKnown RBP16.79■□□□□ 0.28
USP39-208ENST00000455732 CHMP2BQ9UQN3 213 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 TDRKHQ9Y2W6 561 aaKnown RBP16.79■□□□□ 0.28
USP39-208ENST00000455732 MED16Q9Y2X0 877 aa16.79■□□□□ 0.28
USP39-208ENST00000455732 SEC16AO15027 2179 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 PIPSLA2A3N6 862 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 MATN4O95460 622 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 TUBB4AP04350 444 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 CHRM5P08912 532 aaPredicted RBP16.78■□□□□ 0.28
USP39-208ENST00000455732 MSL3P1P0C860 447 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 ERVK-10P10266 1014 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 FOLR1P15328 257 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 CDH3P22223 829 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 CCNFP41002 786 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 ARL4DP49703 201 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 MPP1Q00013 466 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 TUBB3Q13509 450 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 MAP7Q14244 749 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 GRB7Q14451 532 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 TTLL9Q3SXZ7 439 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 SPESP1Q6UW49 350 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 NEK10Q6ZWH5 1172 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 NLGN4XQ8N0W4 816 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 NLGN4YQ8NFZ3 816 aaPredicted RBP16.78■□□□□ 0.28
USP39-208ENST00000455732 PPM1MQ96MI6 270 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 FOPNLQ96NB1 174 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 FCRL4Q96PJ5 515 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 RAB11FIP5Q9BXF6 653 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 PDE7BQ9NP56 450 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 GALPQ9UBC7 116 aa16.78■□□□□ 0.28
USP39-208ENST00000455732 HAUS5O94927 633 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 C1orf105O95561 183 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 F7P08709 466 aaPredicted RBP16.77■□□□□ 0.28
USP39-208ENST00000455732 EBLN1P0CF75 366 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 LIFP15018 202 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 ZNF28P17035 718 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 MAP4P27816 1152 aaKnown RBP16.77■□□□□ 0.28
USP39-208ENST00000455732 TUBB4BP68371 445 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 MRPS25P82663 173 aaKnown RBP16.77■□□□□ 0.28
USP39-208ENST00000455732 CALCOCO2Q13137 446 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 TUBB2AQ13885 445 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 KCNAB1Q14722 419 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 KIR2DS3Q14952 304 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 WHAMMP3Q1A5X7 153 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 TAF1BQ53T94 588 aaPredicted RBP16.77■□□□□ 0.28
USP39-208ENST00000455732 TMTC4Q5T4D3 741 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 CNSTQ6PJW8 725 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 PPP1R3BQ86XI6 285 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 OR8K5Q8NH50 307 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 CFAP61Q8NHU2 1237 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 GIMAP7Q8NHV1 300 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 FLVCR1-AS1Q8TAF5 88 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 RAD51AP1Q96B01 352 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 FAM136AQ96C01 138 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 CFAP36Q96G28 342 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 AARSD1Q9BTE6 412 aaKnown RBP16.77■□□□□ 0.28
USP39-208ENST00000455732 TUBB2BQ9BVA1 445 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 SLC12A9Q9BXP2 914 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 PHACTR1Q9C0D0 580 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 CHRNA10Q9GZZ6 450 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 RAB17Q9H0T7 212 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 SYTL2Q9HCH5 934 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 GRHL1Q9NZI5 618 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 PLAGL1Q9UM63 463 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 UTP11Q9Y3A2 253 aaKnown RBP16.77■□□□□ 0.28
USP39-208ENST00000455732 NFS1Q9Y697 457 aa16.77■□□□□ 0.28
USP39-208ENST00000455732 TLN1Q9Y490 2541 aaKnown RBP16.76■□□□□ 0.27
USP39-208ENST00000455732 BOD1L1Q8NFC6 3051 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 SLC9B1P1A6NJY1 282 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 KIF2AO00139 706 aaPredicted RBP16.76■□□□□ 0.27
USP39-208ENST00000455732 EIF3FO00303 357 aaPredicted RBP16.76■□□□□ 0.27
USP39-208ENST00000455732 RASGRF2O14827 1237 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 EIF3HO15372 352 aaKnown RBP eCLIP16.76■□□□□ 0.27
USP39-208ENST00000455732 ENO3P13929 434 aaPredicted RBP16.76■□□□□ 0.27
USP39-208ENST00000455732 UGT2B7P16662 529 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 PEBP1P30086 187 aaKnown RBP16.76■□□□□ 0.27
USP39-208ENST00000455732 PDIA2Q13087 525 aaKnown RBP16.76■□□□□ 0.27
USP39-208ENST00000455732 ACSBG2Q5FVE4 666 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 TEDDM1Q5T9Z0 273 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 TTC23LQ6PF05 361 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 FBXO38Q6PIJ6 1188 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 LINC01555Q8NAE3 123 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 ZSCAN1Q8NBB4 408 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 FBXO36Q8NEA4 188 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 OR2L8Q8NGY9 312 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 MAGEC3Q8TD91 643 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 SKA2Q8WVK7 121 aaPredicted RBP16.76■□□□□ 0.27
USP39-208ENST00000455732 TRAPPC9Q96Q05 1148 aa16.76■□□□□ 0.27
USP39-208ENST00000455732 OR2A14Q96R47 310 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms