RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 SERPINB12Q96P63 405 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 SLC7A5P2Q9GIP4 190 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 TWSG1Q9GZX9 223 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 SLC25A18Q9H1K4 315 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 HEMK1Q9Y5R4 338 aaPredicted RBP20.51■□□□□ 0.87
HMGB3-205ENST00000455596 E7EQ34 232 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 H3BMM5 538 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 ZNF185O15231 689 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 FMO4P31512 558 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 ITGA1P56199 1179 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 RPS15P62841 145 aaKnown RBP20.5■□□□□ 0.87
HMGB3-205ENST00000455596 DHX34Q14147 1143 aaKnown RBP20.5■□□□□ 0.87
HMGB3-205ENST00000455596 SLC5A12Q1EHB4 618 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 ZNF789Q5FWF6 425 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 PLEKHS1Q5SXH7 462 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 TTC23LQ6PF05 361 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 ZNF517Q6ZMY9 492 aaPredicted RBP20.5■□□□□ 0.87
HMGB3-205ENST00000455596 DSELQ8IZU8 1212 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 SLC38A9Q8NBW4 561 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 SEC14L1Q92503 715 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 LPGAT1Q92604 370 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 ZNF669Q96BR6 464 aaPredicted RBP20.5■□□□□ 0.87
HMGB3-205ENST00000455596 BIRC8Q96P09 236 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 ACTL8Q9H568 366 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 FAM60AQ9NP50 221 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 POLHQ9Y253 713 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 MRFAP1Q9Y605 127 aa20.5■□□□□ 0.87
HMGB3-205ENST00000455596 BAHCC1Q9P281 2608 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 CDC14CA4D256 554 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 MEN1O00255 615 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 ESR1P03372 595 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 FURINP09958 794 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 CD9P21926 228 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 PTPN4P29074 926 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 PEBP1P30086 187 aaKnown RBP20.49■□□□□ 0.87
HMGB3-205ENST00000455596 ADARP55265 1226 aaKnown RBP20.49■□□□□ 0.87
HMGB3-205ENST00000455596 ANKRD20A4Q4UJ75 823 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 NEPROQ6NW34 567 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 CILP2Q8IUL8 1156 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 GPR135Q8IZ08 494 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 SKA2Q8WVK7 121 aaPredicted RBP20.49■□□□□ 0.87
HMGB3-205ENST00000455596 RUFY1Q96T51 708 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 TRIM56Q9BRZ2 755 aaKnown RBP20.49■□□□□ 0.87
HMGB3-205ENST00000455596 MENTQ9BUN1 341 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 RAB11FIP5Q9BXF6 653 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 CHRNA10Q9GZZ6 450 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 ACTR5Q9H9F9 607 aaPredicted RBP20.49■□□□□ 0.87
HMGB3-205ENST00000455596 VPS9D1Q9Y2B5 631 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 CRYL1Q9Y2S2 319 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 FER1L5A0AVI2 2057 aa20.49■□□□□ 0.87
HMGB3-205ENST00000455596 FASNP49327 2511 aaKnown RBP20.49■□□□□ 0.87
HMGB3-205ENST00000455596 PIEZO2Q9H5I5 2752 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 CCDC88CQ9P219 2028 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 NIPSNAP2O75323 286 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 HBQ1P09105 142 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 TCP1P17987 556 aaKnown RBP20.48■□□□□ 0.87
HMGB3-205ENST00000455596 RORAP35398 523 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 GRB7Q14451 532 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 PPP1R7Q15435 360 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 IZUMO3Q5VZ72 239 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 SYVN1Q86TM6 617 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 PPIL6Q8IXY8 311 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 NAT8LQ8N9F0 302 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 OR2L8Q8NGY9 312 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 RAD51AP1Q96B01 352 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 SLC22A18Q96BI1 424 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 FOPNLQ96NB1 174 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 CHST8Q9H2A9 424 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 INTS10Q9NVR2 710 aaKnown RBP20.48■□□□□ 0.87
HMGB3-205ENST00000455596 IL1RAPL1Q9NZN1 696 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 CIDEBQ9UHD4 219 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 SLC39A10Q9ULF5 831 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 FARSAQ9Y285 508 aaKnown RBP20.48■□□□□ 0.87
HMGB3-205ENST00000455596 KCNMB2Q9Y691 235 aa20.48■□□□□ 0.87
HMGB3-205ENST00000455596 RASGRF2O14827 1237 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 SLC28A2O43868 658 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 CHRM3P20309 590 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 MAGEA3P43357 314 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 RPS18P62269 152 aaKnown RBP20.47■□□□□ 0.87
HMGB3-205ENST00000455596 THOC5Q13769 683 aaKnown RBP20.47■□□□□ 0.87
HMGB3-205ENST00000455596 ZIC1Q15915 447 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 CENPUQ71F23 418 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 PRICKLE2Q7Z3G6 844 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 TMEM135Q86UB9 458 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 RAB42Q8N4Z0 105 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 LINC01555Q8NAE3 123 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 IL17FQ96PD4 163 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 PCMTD2Q9NV79 361 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 NFS1Q9Y697 457 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 KALRNO60229 2985 aa20.47■□□□□ 0.87
HMGB3-205ENST00000455596 ZCWPW2A0A1B0GU75 182 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 E5RI56 91 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 J3QKU1 62 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 ZNF749O43361 778 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 OR2B3O76000 313 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 USP1O94782 785 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 C1orf105O95561 183 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 S1PR4O95977 384 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 RAB40ALP0C0E4 278 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 PKMP14618 531 aaKnown RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms