RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 EBNA1BP2Q99848 306 aaKnown RBP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 AKIRIN1Q9H9L7 192 aaPredicted RBP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 FBXO6Q9NRD1 293 aaPredicted RBP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 FBXO5Q9UKT4 447 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 PADI1Q9ULC6 663 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 RUVBL2Q9Y230 463 aaKnown RBP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 CACNA1GO43497 2377 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 LOC400499M0QZD8 3231 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 ISM1B1AKI9 464 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 NKX2-8O15522 239 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 MAP3K7O43318 606 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 HAUS5O94927 633 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 MATN4O95460 622 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 C1orf105O95561 183 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 MT-ND3P03897 115 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 CCNYL3P0C7X3 344 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 ERVK-10P10266 1014 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 PGAM1P18669 254 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 CD9P21926 228 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 PKLRP30613 574 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 DLSTP36957 453 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 SLC1A2P43004 574 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 RAB28P51157 221 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 LY6DQ14210 128 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 CRYMQ14894 314 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 ZIC1Q15915 447 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 LINC00303Q3SY05 128 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 BBS9Q3SYG4 887 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 CCSMST1Q4G0I0 132 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 HP1BP3Q5SSJ5 553 aaPredicted RBP12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 PRAMEF17Q5VTA0 474 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 HIBCHQ6NVY1 386 aaPredicted RBP12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 ZNF549Q6P9A3 640 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 CNSTQ6PJW8 725 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 CDHR3Q6ZTQ4 885 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 TMEM126BQ8IUX1 230 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 SPNS2Q8IVW8 549 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 LMNTD2Q8IXW0 634 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 ZBTB2Q8N680 514 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 SLC38A9Q8NBW4 561 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 OR1L3Q8NH93 324 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 CALML6Q8TD86 181 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 EXTL1Q92935 676 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 IL17FQ96PD4 163 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 KRT12Q99456 494 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 EFHD1Q9BUP0 239 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 SYTL2Q9HCH5 934 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 FAM60AQ9NP50 221 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 IARS2Q9NSE4 1012 aaKnown RBP12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 TSR3Q9UJK0 312 aaKnown RBP12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 MED16Q9Y2X0 877 aa12.31□□□□□ -0.44
PRPF40A-203ENST00000448428 IGSF10Q6WRI0 2623 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 A0A0J9YY10 115 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 EIF4E1BA6NMX2 242 aaKnown RBP12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 ZNF891A8MT65 544 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 TMEM150CB9EJG8 249 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 E5RI56 91 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 TERTO14746 1132 aaKnown RBP12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 RASGRF2O14827 1237 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 TP73O15350 636 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 HCRTR1O43613 425 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 SCRG1O75711 98 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 TTC4O95801 387 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 ITGB2P05107 769 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 MSL3P1P0C860 447 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 ATP5DP30049 168 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 CASQ1P31415 396 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 BDKRB1P46663 353 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 CLCN7P51798 805 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 ITGA8P53708 1063 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 ETF1P62495 437 aaKnown RBP12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 MRPS25P82663 173 aaKnown RBP12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 MPP1Q00013 466 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 KIR2DS3Q14952 304 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 TBR1Q16650 682 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 SLC5A12Q1EHB4 618 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 KLHL38Q2WGJ6 581 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 ACSBG2Q5FVE4 666 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 SPANXN3Q5MJ09 141 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 FAM199XQ6PEV8 388 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 TTC23LQ6PF05 361 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 SYT10Q6XYQ8 523 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 KCNMB4Q86W47 210 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 FAM20CQ8IXL6 584 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 PDIK1LQ8N165 341 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 OR2L8Q8NGY9 312 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 RAD51AP1Q96B01 352 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 TCTN2Q96GX1 697 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 SNF8Q96H20 258 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 FOPNLQ96NB1 174 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 SLC30A3Q99726 388 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 NAT9Q9BTE0 207 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 TRIM31Q9BZY9 425 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 FANCEQ9HB96 536 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 PLAC1Q9HBJ0 212 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 LHX9Q9NQ69 397 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 SERTAD3Q9UJW9 196 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 CROTQ9UKG9 612 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 SLC39A10Q9ULF5 831 aa12.3□□□□□ -0.44
PRPF40A-203ENST00000448428 MRPS18BQ9Y676 258 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms