RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 SRFBP1Q8NEF9 429 aaKnown RBP8.19□□□□□ -1.1
USP54-203ENST00000418501 SLC7A6OSQ96CW6 309 aaPredicted RBP8.19□□□□□ -1.1
USP54-203ENST00000418501 SMIM14Q96QK8 99 aa8.19□□□□□ -1.1
USP54-203ENST00000418501 FRG2BQ96QU4 278 aa8.19□□□□□ -1.1
USP54-203ENST00000418501 CDRT15Q96T59 188 aa8.19□□□□□ -1.1
USP54-203ENST00000418501 C20orf27Q9GZN8 174 aa8.19□□□□□ -1.1
USP54-203ENST00000418501 GPSM3Q9Y4H4 160 aa8.19□□□□□ -1.1
USP54-203ENST00000418501 PRR23AA6NEV1 266 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 IGLON5A6NGN9 336 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ANKDD1BA6NHY2 528 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ANHXE9PGG2 379 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 E2F3O00716 465 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 NDUFS2O75306 463 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 HOXC4P09017 264 aaPredicted RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 PCNAP12004 261 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 RPS14P62263 151 aaKnown RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 YPEL5P62699 121 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 RPL38P63173 70 aaKnown RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 SRSF11Q05519 484 aaKnown RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 LRIT3Q3SXY7 679 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 LARP4Q71RC2 724 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP54-203ENST00000418501 FKBP9P1Q75LS8 142 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 PDZD3Q86UT5 571 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 SPATA24Q86W54 205 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 OOSP2Q86WS3 158 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ZFAND4Q86XD8 727 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 DCP2Q8IU60 420 aaKnown RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 PHACTR4Q8IZ21 702 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 SDCCAG3Q96C92 435 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ITCHQ96J02 903 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 FERD3LQ96RJ6 166 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 C8orf4Q9NR00 106 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 AIG1Q9NVV5 245 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 CDH22Q9UJ99 828 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 BAG5Q9UL15 447 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 TIMM22Q9Y584 194 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 A0A1W2PQU0 124 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 TMEM247A6NEH6 219 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 GAPDHSO14556 408 aaPredicted RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 TRIM24O15164 1050 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ZW10O43264 779 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 SH3BP5O60239 455 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 PSMG1O95456 288 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ABATP80404 500 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 SLC25A3Q00325 362 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 CDK3Q00526 305 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 PON2Q15165 354 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 CPSF6Q16630 551 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP54-203ENST00000418501 MTX3Q5HYI7 312 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 REP15Q6BDI9 236 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 CHRDL2Q6WN34 429 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 SYT12Q8IV01 421 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 RASGEF1AQ8N9B8 481 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 SMRP1Q8NCR6 262 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 TSTD1Q8NFU3 115 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 TFGQ92734 400 aaPredicted RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 EHD1Q9H4M9 534 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 BRF2Q9HAW0 419 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 TDRKHQ9Y2W6 561 aaKnown RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 MTCL1Q9Y4B5 1905 aaKnown RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 A0A088AWK7 358 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 SLC5A10A0PJK1 596 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 PIPSLA2A3N6 862 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 OR5K4A6NMS3 321 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ZNF195O14628 629 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 APBB3O95704 486 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ZNF10P21506 573 aaPredicted RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 KCNA5P22460 613 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 KIAA1024LP59773 190 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ILF3Q12906 894 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP54-203ENST00000418501 CTC1Q2NKJ3 1217 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 PROSER1Q86XN7 944 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 GOLM1Q8NBJ4 401 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 CXorf40BQ96DE9 158 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 WDR92Q96MX6 357 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 GBP5Q96PP8 586 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 ECSITQ9BQ95 431 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 CACYBPQ9HB71 228 aaKnown RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 INTS7Q9NVH2 962 aaKnown RBP8.18□□□□□ -1.1
USP54-203ENST00000418501 ASIC5Q9NY37 505 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 KIAA1671Q9BY89 1806 aa8.18□□□□□ -1.1
USP54-203ENST00000418501 A0A1W2PP18 115 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 LOC730098B7Z3J9 87 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 MTX2O75431 263 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 FKBP9O95302 570 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 T-ENOLP0DO92 83 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 RXRGP48443 463 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 TDGQ13569 410 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 C6orf10Q5SRN2 563 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 IL23RQ5VWK5 629 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 GRHL2Q6ISB3 625 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 KLHL35Q6PF15 583 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ADGRG6Q86SQ4 1221 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 TREML1Q86YW5 311 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ZNF655Q8N720 491 aaPredicted RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 EID2BQ96D98 161 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 SPACA7Q96KW9 195 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 OR2M4Q96R27 311 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 MTG2Q9H4K7 406 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PELI2Q9HAT8 420 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms