RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 C4orf17Q53FE4 359 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 PLEKHS1Q5SXH7 462 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 HECTD2Q5U5R9 776 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 NKAIN2Q5VXU1 208 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 FAM45BPQ6NSW5 357 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ABRAXAS1Q6UWZ7 409 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 TIFABQ6ZNK6 161 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 RBM44Q6ZP01 1051 aaKnown RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 FAM83HQ6ZRV2 1179 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 DET1Q7L5Y6 550 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 CHST15Q7LFX5 561 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 CCDC91Q7Z6B0 441 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 CTAGE3PQ8IX95 158 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 OTUD6BQ8N6M0 293 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ACVR1CQ8NER5 493 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 FAM45AQ8TCE6 357 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 CD200R1Q8TD46 325 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 MZB1Q8WU39 189 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 NAT14Q8WUY8 206 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 UBLCP1Q8WVY7 318 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 JPH3Q8WXH2 748 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 GLMNQ92990 594 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 PRR11Q96HE9 360 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 OLFM1Q99784 485 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 TSSK1BQ9BXA7 367 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 GSDMCQ9BYG8 508 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ROPN1BQ9BZX4 212 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 OR52A5Q9H2C5 316 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ROPN1Q9HAT0 212 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 SPATS2LQ9NUQ6 558 aaKnown RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 GALPQ9UBC7 116 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ZNHIT2Q9UHR6 403 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ACSL5Q9ULC5 683 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 MTO1Q9Y2Z2 717 aaKnown RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 VWA7Q9Y334 891 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 FAM95CA0A1B0GW59 222 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 IQCF5A8MTL0 148 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 RRP8O43159 456 aaKnown RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 NOBOXO60393 691 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 C1QL1O75973 258 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 TSPAN12O95859 305 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 ALDOAP04075 364 aaKnown RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 CBSLP0DN79 551 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 ACP5P13686 325 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 BRAFP15056 766 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 VCLP18206 1134 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 ACADLP28330 430 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 CBSP35520 551 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 SLC26A3P40879 764 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 PPM1FP49593 454 aaPredicted RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 PCBP4P57723 403 aaKnown RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 OR1D5P58170 312 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 TLR1Q15399 786 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 INSCQ1MX18 579 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 PLA2G4EQ3MJ16 856 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 TNFAIP8L3Q5GJ75 292 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 PTRHD1Q6GMV3 140 aaKnown RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 CAPRIN2Q6IMN6 1127 aaKnown RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 FBXO38Q6PIJ6 1188 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 CRTC3Q6UUV7 619 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 LRIG3Q6UXM1 1119 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 SH2D5Q6ZV89 423 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 NEK10Q6ZWH5 1172 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 USP53Q70EK8 1073 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 GKN2Q86XP6 184 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 CEP97Q8IW35 865 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 SLC22A15Q8IZD6 547 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 KRT222Q8N1A0 295 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 RIBC1Q8N443 379 aaPredicted RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 LILRA3Q8N6C8 439 aaPredicted RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 ARL10Q8N8L6 244 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 RCBTB1Q8NDN9 531 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 KCNE4Q8WWG9 221 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 PMEPA1Q969W9 287 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 MTBPQ96DY7 904 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 PDLIM5Q96HC4 596 aaKnown RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 UBXN10Q96LJ8 280 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 GFM1Q96RP9 751 aaKnown RBP8.96□□□□□ -0.98
VPS53-203ENST00000401468 NDNQ99608 321 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 SLC30A3Q99726 388 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 CCDC77Q9BR77 488 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 TWSG1Q9GZX9 223 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 SEMA6CQ9H3T2 930 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 PRORYQ9H606 182 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 RUBCNLQ9H714 662 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 COG4Q9H9E3 785 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 POLR1BQ9H9Y6 1135 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 KLC4Q9NSK0 619 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 TAS2R13Q9NYV9 303 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 TAAR2Q9P1P5 351 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 TXNDC16Q9P2K2 825 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 TBC1D29Q9UFV1 150 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 PISDQ9UG56 409 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 LGALS13Q9UHV8 139 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 ZNF462Q96JM2 2506 aa8.96□□□□□ -0.98
VPS53-203ENST00000401468 OR5K4A6NMS3 321 aa8.95□□□□□ -0.98
VPS53-203ENST00000401468 EIF4E1BA6NMX2 242 aaKnown RBP8.95□□□□□ -0.98
VPS53-203ENST00000401468 CDH16O75309 829 aa8.95□□□□□ -0.98
VPS53-203ENST00000401468 VPS26AO75436 327 aa8.95□□□□□ -0.98
VPS53-203ENST00000401468 MATN4O95460 622 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms