RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 STK38LQ9Y2H1 464 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 RALGAPA1Q6GYQ0 2036 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 KIR2DS5A0A0G2JLQ3 304 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 A0A0G2JNG1 304 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 MED19A0JLT2 244 aaPredicted RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 ARHGEF33A8MVX0 844 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 TCP11X1B4DZS4 312 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 KIR2DS3K7RE56 304 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 KLF11O14901 512 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 AQP9O43315 295 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 CCNT2O60583 730 aaKnown RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 VIPP01282 170 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 ACADLP28330 430 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 EEF1DP29692 281 aaKnown RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 NAGLUP54802 743 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 HERVK_113P63132 956 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 FOXK2Q01167 660 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 TSTA3Q13630 321 aaPredicted RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 PUM1Q14671 1186 aaKnown RBP eCLIP13.83□□□□□ -0.2
SKA1-202ENST00000398452 KIR2DS5Q14953 304 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 SETDB1Q15047 1291 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 PHKG1Q16816 387 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 PPP1R3AQ16821 1122 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 KIF19Q2TAC6 998 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 CAPRIN2Q6IMN6 1127 aaKnown RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 ERMP1Q7Z2K6 904 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 SLC9B2Q86UD5 537 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 CRLF3Q8IUI8 442 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 SYTL1Q8IYJ3 562 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 ABCA7Q8IZY2 2146 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 TMEM151AQ8N4L1 468 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 OR5K2Q8NHB8 316 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 CCL4L1Q8NHW4 92 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 ATP6V1E2Q96A05 226 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 CNDP1Q96KN2 507 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 INSM2Q96T92 566 aaPredicted RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 ELF4Q99607 663 aaPredicted RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 TRMOQ9BU70 441 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 LRRC61Q9BV99 259 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 ERVK-6Q9BXR3 956 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 NUSAP1Q9BXS6 441 aaKnown RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 ZDHHC5Q9C0B5 715 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 TCEAL2Q9H3H9 227 aaPredicted RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 PARD6AQ9NPB6 346 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 THAP1Q9NVV9 213 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 OPTCQ9UBM4 332 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 IKZF3Q9UKT9 509 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 PCOLCE2Q9UKZ9 415 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 SLC6A14Q9UN76 642 aa13.83□□□□□ -0.2
SKA1-202ENST00000398452 CFAP20Q9Y6A4 193 aaKnown RBP13.83□□□□□ -0.2
SKA1-202ENST00000398452 FRYLO94915 3013 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 KLK8O60259 260 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 NPHS1O60500 1241 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 KATNA1O75449 491 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 CRCPO75575 148 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 STK16O75716 305 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 CER1O95813 267 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 SBK3P0C264 359 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 ALPPL2P10696 532 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 FGF3P11487 239 aaPredicted RBP13.82□□□□□ -0.2
SKA1-202ENST00000398452 MTHFD1P11586 935 aaKnown RBP13.82□□□□□ -0.2
SKA1-202ENST00000398452 LSP1P33241 339 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 CTSKP43235 329 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 KCNC1P48547 511 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 SLC1A6P48664 564 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 ATXN3P54252 364 aaPredicted RBP13.82□□□□□ -0.2
SKA1-202ENST00000398452 ABCE1P61221 599 aaKnown RBP13.82□□□□□ -0.2
SKA1-202ENST00000398452 CBX1P83916 185 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 PRKG2Q13237 762 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 PLCL1Q15111 1095 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 RPE65Q16518 533 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 METTL2BQ6P1Q9 378 aaKnown RBP13.82□□□□□ -0.2
SKA1-202ENST00000398452 RGS9BPQ6ZS82 235 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 ZCCHC23Q6ZST2 131 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 CPLX4Q7Z7G2 160 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 OR5AR1Q8NGP9 310 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 MAPK15Q8TD08 544 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 ZDHHC1Q8WTX9 485 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 SH3KBP1Q96B97 665 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 FBXL8Q96CD0 374 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 L3HYPDHQ96EM0 354 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 CHMP6Q96FZ7 201 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 PKP4Q99569 1192 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 HGH1Q9BTY7 390 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 GATA5Q9BWX5 397 aaPredicted RBP13.82□□□□□ -0.2
SKA1-202ENST00000398452 CCDC134Q9H6E4 229 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 PRM3Q9NNZ6 103 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 SPATA7Q9P0W8 599 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 TBC1D29Q9UFV1 150 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 WDR37Q9Y2I8 494 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 PCDHGA5Q9Y5G8 931 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 SNX11Q9Y5W9 270 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 CEP192Q8TEP8 1941 aa13.82□□□□□ -0.2
SKA1-202ENST00000398452 DMXL1Q9Y485 3027 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 GMNCA6NCL1 334 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 B4DGG1 531 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 MLYCDO95822 493 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 MTHFD2P13995 350 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 CCND1P24385 295 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 HSPA7P48741 367 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms