RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 RNF168Q8IYW5 571 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 FRG2BQ96QU4 278 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 GPN3Q9UHW5 284 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 VPS4AQ9UN37 437 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 OARD1Q9Y530 152 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 C2CD4DB7Z1M9 353 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 TYROBPO43914 113 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 EGFP01133 1207 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 NTRK1P04629 796 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 CHRNGP07510 517 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 EPORP19235 508 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 ITGAXP20702 1163 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 ATP6V1C1P21283 382 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 EEF1B2P24534 225 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 SERPINB1P30740 379 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 PRKAG1P54619 331 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 CDKN2DP55273 166 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 UBAP2LQ14157 1087 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 TIGD2Q4W5G0 525 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 PNCKQ6P2M8 343 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 ZNF549Q6P9A3 640 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 ZC3H14Q6PJT7 736 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 USP30Q70CQ3 517 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 ADIPOR2Q86V24 386 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 DHFR2Q86XF0 187 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 OR13J1Q8NGT2 312 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 FAM174AQ8TBP5 190 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 BOCQ9BWV1 1114 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 DNMT3AQ9Y6K1 912 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 GJB3O75712 270 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 UNC5CO95185 931 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 TRIP10Q15642 601 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 TECRLQ5HYJ1 363 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 C10orf62Q5T681 223 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 UNC5DQ6UXZ4 953 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 CEP97Q8IW35 865 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 PLD6Q8N2A8 252 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 AADATQ8N5Z0 425 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 SLC5A11Q8WWX8 675 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 ARRDC3Q96B67 414 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 MTERF1Q99551 399 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 OLFM1Q99784 485 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 PIF1Q9H611 641 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 PDFQ9HBH1 243 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 SEMA3GQ9NS98 782 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 ADPRHL2Q9NX46 363 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 INTS6Q9UL03 887 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 FCGR1AP12314 374 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 ALAS2P22557 587 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 DPP6P42658 865 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 PXNP49023 591 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 MANFP55145 182 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 C2orf80Q0P641 193 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 LRP8Q14114 963 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 LRRC23Q53EV4 343 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 PRPF38BQ5VTL8 546 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 GOLGA7Q7Z5G4 137 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 GALNT7Q86SF2 657 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 PIANPQ8IYJ0 282 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 SAMD14Q8IZD0 417 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 SLC44A3Q8N4M1 653 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 FIG4Q92562 907 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 HBEGFQ99075 208 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 C3orf14Q9HBI5 128 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 SPAG4Q9NPE6 437 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 KLHL42Q9P2K6 505 aa8.08□□□□□ -1.12
PTPRD-204ENST00000397606 GOLGA4Q13439 2230 aaKnown RBP8.08□□□□□ -1.12
PTPRD-204ENST00000397606 MROH6A6NGR9 719 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 PRRT4C9JH25 899 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 NRP2O60462 931 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 TPST1O60507 370 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 FKBP6O75344 327 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 SYPP08247 313 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 HRH2P25021 359 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 CRATP43155 626 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 IRX1P78414 480 aaPredicted RBP8.07□□□□□ -1.12
PTPRD-204ENST00000397606 STX4Q12846 297 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 KLF10Q13118 480 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 SYCE2Q6PIF2 218 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 YTHDF3Q7Z739 585 aaKnown RBP8.07□□□□□ -1.12
PTPRD-204ENST00000397606 CNTN4Q8IWV2 1026 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 CAMKVQ8NCB2 501 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 OLIG1Q8TAK6 271 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 TMEM237Q96Q45 408 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 CCDC134Q9H6E4 229 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 TBC1D17Q9HA65 648 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 VPS29Q9UBQ0 182 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 PPM1HQ9ULR3 514 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 FZD4Q9ULV1 537 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 GPR34Q9UPC5 381 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 PCDHGA2Q9Y5H1 932 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 WASF2Q9Y6W5 498 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 SHOX2O60902 331 aaPredicted RBP8.07□□□□□ -1.12
PTPRD-204ENST00000397606 TCF3P15923 654 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 PSME3P61289 254 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 CDK3Q00526 305 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 PCLAFQ15004 111 aa8.07□□□□□ -1.12
PTPRD-204ENST00000397606 FAM98BQ52LJ0 330 aaKnown RBP8.07□□□□□ -1.12
PTPRD-204ENST00000397606 PRSS36Q5K4E3 855 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms