RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 BRMS1LQ5PSV4 323 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ZCCHC12Q6PEW1 402 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 RAVER1Q8IY67 606 aaKnown RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 PHTF2Q8N3S3 785 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 OR6K6Q8NGW6 343 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 CXorf40BQ96DE9 158 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 WDR18Q9BV38 432 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 SLC17A6Q9P2U8 582 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 TRPV2Q9Y5S1 764 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 MAP2P11137 1827 aaKnown RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 SPATA31C1P0DKV0 1188 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 PABPC1LQ4VXU2 614 aaKnown RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 NCEH1Q6PIU2 408 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 RASGEF1AQ8N9B8 481 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 OR2L8Q8NGY9 312 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 FAXDC2Q96IV6 333 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 TTYH3Q9C0H2 523 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 RFPL1O75677 317 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 CYP1B1Q16678 543 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 TMEM44Q2T9K0 475 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 SNAP47Q5SQN1 464 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 OR2T5Q6IEZ7 315 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 PTF1AQ7RTS3 328 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 OR2T29Q8NH02 315 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 DCAKDQ8WVC6 231 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 AURKBQ96GD4 344 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 C5orf34Q96MH7 638 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 AIF1LQ9BQI0 150 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF649Q9BS31 505 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 HCN3Q9P1Z3 774 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 TNFSF13BQ9Y275 285 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 POFUT2Q9Y2G5 429 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 UNC13BO14795 1591 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 TOXO94900 526 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 PABPC4LP0CB38 370 aaKnown RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 AMD1P17707 334 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 ACVR2AP27037 513 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 RXRBP28702 533 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 MTIF3Q9H2K0 278 aaKnown RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 CFAP97Q9P2B7 532 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 SSX5O60225 188 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 ITGA10O75578 1167 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 AKT2P31751 481 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 CTC1Q2NKJ3 1217 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 GXYLT1Q4G148 440 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 KIF18BQ86Y91 864 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 PPP1R16AQ96I34 528 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF641Q96N77 438 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 AKTIPQ9H8T0 292 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 HMGXB4Q9UGU5 601 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 SPARCP09486 303 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 HOXD12P35452 270 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 KLHL35Q6PF15 583 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 SSX6Q7RTT6 188 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 RANBP3LQ86VV4 465 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 CFAP52Q8N1V2 620 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 JPH3Q8WXH2 748 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 NDRG1Q92597 394 aaKnown RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 COL21A1Q96P44 957 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 HEPHQ9BQS7 1158 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 CDT1Q9H211 546 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 NDUFAF4Q9P032 175 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 ACTR3BQ9P1U1 418 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 CYTH4Q9UIA0 394 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 ROBO3Q96MS0 1386 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 SLC35G4P0C7Q5 338 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 PRKACGP22612 351 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 AIF1P55008 147 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 MCCD1P59942 119 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 HNRNPA0Q13151 305 aaKnown RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 PAMR1Q6UXH9 720 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 KCTD9Q7L273 389 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 TCEAL4Q96EI5 215 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 BIRC8Q96P09 236 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 RIOK2Q9BVS4 552 aaKnown RBP11.63□□□□□ -0.55
SYNPO-202ENST00000394243 PLEKHA6Q9Y2H5 1048 aa11.63□□□□□ -0.55
SYNPO-202ENST00000394243 CAMSAP1Q5T5Y3 1602 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 BCAS2O75934 225 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 IFNA21P01568 189 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CTSEP14091 401 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 PVALBP20472 110 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 ERVK-8P63133 956 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CCBE1Q6UXH8 406 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SYVN1Q86TM6 617 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 ANKRD13BQ86YJ7 626 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CCDC54Q8NEL0 328 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 MAELQ96JY0 434 aaKnown RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 OXSMQ9NWU1 459 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 OSER1Q9NX31 292 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 FARSAQ9Y285 508 aaKnown RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CLCA3PQ9Y6N3 262 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 RFPL2O75678 378 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 APLP1P51693 650 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 TAS2R39P59534 338 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 MTFR2Q6P444 385 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 TIGD4Q8IY51 512 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 COQ8BQ96D53 544 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 NUSAP1Q9BXS6 441 aaKnown RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 PPIL3Q9H2H8 161 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms