RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GPRC5BQ9NZH0 403 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 RBMX2Q9Y388 322 aaKnown RBP11.87□□□□□ -0.51
CLIP3-201ENST00000360535 SCN10AQ9Y5Y9 1956 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 FAM92AA1XBS5 289 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 CLDN11O75508 207 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 IGLV3-27P01718 113 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 INHBBP09529 407 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 CKBP12277 381 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 BCKDHAP12694 445 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 EPB42P16452 691 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 CR2P20023 1033 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 IGFBP5P24593 272 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 GSTM2P28161 218 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 EPHA2P29317 976 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 PHC1P78364 1004 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ZXDBP98169 803 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 CACNG1Q06432 222 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 DSC1Q08554 894 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 MBTPS1Q14703 1052 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 VTCN1Q7Z7D3 282 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 HDAC2Q92769 488 aaKnown RBP11.87□□□□□ -0.51
CLIP3-201ENST00000360535 FATE1Q969F0 183 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 APOLD1Q96LR9 279 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 DPH2Q9BQC3 489 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-201ENST00000360535 TMEM9Q9P0T7 183 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 MTRRQ9UBK8 725 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 NINQ8N4C6 2090 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 VNN2O95498 520 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF12P17014 697 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ITPKAP23677 461 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 GP2P55259 537 aaKnown RBP11.86□□□□□ -0.51
CLIP3-201ENST00000360535 NCS1P62166 190 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 EMX1Q04741 257 aaPredicted RBP11.86□□□□□ -0.51
CLIP3-201ENST00000360535 OR4F3Q6IEY1 312 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 FUT10Q6P4F1 479 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 C17orf99Q6UX52 265 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ANGPTL8Q6UXH0 198 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF621Q6ZSS3 439 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF540Q8NDQ6 660 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 RPL3LQ92901 407 aaKnown RBP11.86□□□□□ -0.51
CLIP3-201ENST00000360535 TUBA1CQ9BQE3 449 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 TBCCD1Q9NVR7 557 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 IL17CQ9P0M4 197 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 KIF17Q9P2E2 1029 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ABCG2Q9UNQ0 655 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ARNTLO00327 626 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 SMAD6O43541 496 aaKnown RBP11.86□□□□□ -0.51
CLIP3-201ENST00000360535 SLC11A1P49279 550 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 PPP2R2BQ00005 443 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 NPTX1Q15818 432 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 CHRNA6Q15825 494 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 HECTD3Q5T447 861 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 CEP68Q76N32 757 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 DCP2Q8IU60 420 aaKnown RBP11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ATG16L2Q8NAA4 619 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 OR8J3Q8NGG0 315 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 SOCS4Q8WXH5 440 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 C1QTNF3Q9BXJ4 246 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ATG10Q9H0Y0 220 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ZFYVE1Q9HBF4 777 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ERGIC3Q9Y282 383 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF451Q9Y4E5 1061 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 NEUROG3Q9Y4Z2 214 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 CHD5Q8TDI0 1954 aa11.86□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF99A8MXY4 864 aaPredicted RBP11.85□□□□□ -0.51
CLIP3-201ENST00000360535 H3BNC9 293 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 MTX2O75431 263 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 STC2O76061 302 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 PDYNP01213 254 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 NTRK1P04629 796 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 CYBAP13498 195 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 JAK1P23458 1154 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 CA8P35219 290 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 RING1Q06587 406 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 GRSF1Q12849 480 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLIP3-201ENST00000360535 CDK5R2Q13319 367 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 SLC14A1Q13336 389 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 TSTA3Q13630 321 aaPredicted RBP11.85□□□□□ -0.51
CLIP3-201ENST00000360535 SYT16Q17RD7 645 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 CARD16Q5EG05 197 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 CST9Q5W186 159 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 GTF2IRD2BQ6EKJ0 949 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 LAIR2Q6ISS4 152 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 ANKS3Q6ZW76 656 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 TSPAN33Q86UF1 283 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 GTF2IRD2Q86UP8 949 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 SH3YL1Q96HL8 342 aaPredicted RBP11.85□□□□□ -0.51
CLIP3-201ENST00000360535 MAGED4Q96JG8 741 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 BBS2Q9BXC9 721 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 ALOXE3Q9BYJ1 711 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 ELOVL6Q9H5J4 265 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 LRFN2Q9ULH4 789 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 VWA8A3KMH1 1905 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 CLDN25C9JDP6 229 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 AGRPO00253 132 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 MANBAO00462 879 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 AREL1O15033 823 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 ADAM23O75077 832 aa11.85□□□□□ -0.51
CLIP3-201ENST00000360535 NPPAP01160 153 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms