RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PCDHGC5Q9Y5F6 944 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 J3QLW9 94 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 WRBO00258 174 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 KLRC4O43908 158 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 ANPEPP15144 967 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 EPCAMP16422 314 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF19P17023 458 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 HSD11B1P28845 292 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 APLP1P51693 650 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 CLDN2P57739 230 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 LARS2Q15031 903 aaKnown RBP7.21□□□□□ -1.25
VPS13A-202ENST00000357409 LRRC37A5PQ49AS3 106 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 CEP97Q8IW35 865 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 FRMD1Q8N878 549 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 OR4K17Q8NGC6 315 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 OR4C6Q8NH72 309 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 IL4I1Q96RQ9 567 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 NECTIN3Q9NQS3 549 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.21□□□□□ -1.25
VPS13A-202ENST00000357409 MEIS3P2A8K0S8 358 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 SLC26A4O43511 780 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 CSTF1Q05048 431 aaKnown RBP7.21□□□□□ -1.25
VPS13A-202ENST00000357409 SPIRE1Q08AE8 756 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 FOXR2Q6PJQ5 311 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 TMEFF1Q8IYR6 380 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 LRRC39Q96DD0 335 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 PPP3R2Q96LZ3 170 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF285Q96NJ3 590 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 TBC1D14Q9P2M4 693 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 LEF1Q9UJU2 399 aaPredicted RBP7.21□□□□□ -1.25
VPS13A-202ENST00000357409 FZD10Q9ULW2 581 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 PRMT3O60678 531 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 CDC42P60953 191 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 DCST1Q5T197 706 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 SVOPQ8N4V2 548 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 OR5T1Q8NG75 326 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 OR6N1Q8NGY5 312 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 AGAP11Q8TF27 550 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 OTUB2Q96DC9 234 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 WDR26Q9H7D7 661 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 ANKHQ9HCJ1 492 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 SRA1Q9HD15 236 aaKnown RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 MRPS33Q9Y291 106 aaKnown RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 MYRFQ9Y2G1 1151 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 FAM172BPA6NC97 362 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 RTCAO00442 366 aaKnown RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 SUV39H1O43463 412 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 DCNP07585 359 aaKnown RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 HOXA7P31268 230 aaPredicted RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 POLR2JP52435 117 aaKnown RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 CDH4P55283 916 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 CCDC115Q96NT0 180 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 ZNF607Q96SK3 696 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 IFT27Q9BW83 186 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 PLEKHA6Q9Y2H5 1048 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 A6NLC8 198 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 H7BY64 318 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 PGRMC2O15173 223 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 BEST1O76090 585 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 JUNDP17535 347 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 FMO3P31513 532 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 RXRGP48443 463 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 AKR1D1P51857 326 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 C14orf80Q86SX3 495 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 TRIM73Q86UV7 250 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 OSTM1Q86WC4 334 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 FSTL5Q8N475 847 aaPredicted RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 PRAP1Q96NZ9 151 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 C1QTNF1Q9BXJ1 281 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 LHX5Q9H2C1 402 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 TLR9Q9NR96 1032 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 SESN1Q9Y6P5 492 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 IGHV3-64DA0A0J9YX35 117 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 A0A1W2PRB8 838 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 E2F3O00716 465 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 PAX7P23759 505 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 TAS2R39P59534 338 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 TNK2Q07912 1038 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 BNIP2Q12982 314 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 KRR1Q13601 381 aaKnown RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 MYBPC3Q14896 1274 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 FAM71AQ8IYT1 594 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 PLD5Q8N7P1 536 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 TWNKQ96RR1 684 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 ABI3Q9P2A4 366 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 PDLIM1O00151 329 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 GSC2O15499 205 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 CD247P20963 164 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 CCNHP51946 323 aaPredicted RBP7.21□□□□□ -1.26
VPS13A-202ENST00000357409 SLC9B1Q4ZJI4 515 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 SLC29A4Q7RTT9 530 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 CYP2U1Q7Z449 544 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 FBXW8Q8N3Y1 598 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 GINS4Q9BRT9 223 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 TBC1D30Q9Y2I9 924 aa7.21□□□□□ -1.26
VPS13A-202ENST00000357409 VNN2O95498 520 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 RHOP08100 348 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 ETV5P41161 510 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 MAPK14Q16539 360 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms