RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 C1RP00736 705 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 CST3P01034 146 aaPredicted RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 CYBBP04839 570 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 RETP07949 1114 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 NCF1P14598 390 aaPredicted RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 CPB1P15086 417 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 RAB3AP20336 220 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 DDCP20711 480 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 ZP3P21754 424 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 CBLP22681 906 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 RPS12P25398 132 aaKnown RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 TRIM23P36406 574 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 KCNC1P48547 511 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 CLCN5P51795 746 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 POLR2JP52435 117 aaKnown RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 PER3P56645 1201 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 OR4D2P58180 307 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 HERVK_113P63132 956 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 RBP5P82980 135 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SLC6A3Q01959 620 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SP3Q02447 781 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 RUNX1T1Q06455 604 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 HYAL2Q12891 473 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 ZNF267Q14586 743 aaPredicted RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 EIF4HQ15056 248 aaKnown RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SMAD1Q15797 465 aaKnown RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 FUT11Q495W5 492 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SETMARQ53H47 684 aaPredicted RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 ZNF678Q5SXM1 525 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SLC35F1Q5T1Q4 408 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SH3PXD2AQ5TCZ1 1133 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 MLIPQ5VWP3 458 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 MZT2BQ6NZ67 158 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 HHIPL2Q6UWX4 724 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 ZNF367Q7RTV3 350 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 GPAT4Q86UL3 456 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 COMMD7Q86VX2 200 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 TRIM69Q86WT6 500 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 PHYKPLQ8IUZ5 450 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SCUBE3Q8IX30 993 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 DTWD1Q8N5C7 304 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 CDYL2Q8N8U2 506 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 OR7D4Q8NG98 312 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 HERVK_113Q902F9 699 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 ISG20Q96AZ6 181 aaKnown RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 NEDD4LQ96PU5 975 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 PITX2Q99697 317 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 COPS4Q9BT78 406 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 ERVK-6Q9BXR3 956 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 RACGAP1Q9H0H5 632 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SLC6A17Q9H1V8 727 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 PRDM12Q9H4Q4 367 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 CYP4F12Q9HCS2 524 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SLC52A3Q9NQ40 469 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 PDLIM7Q9NR12 457 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 IGSF5Q9NSI5 407 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 PLCXD1Q9NUJ7 323 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 FAM105AQ9NUU6 356 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 SETD4Q9NVD3 440 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 PIH1D1Q9NWS0 290 aaKnown RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 ERVK13-1Q9NX77 482 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 KIF17Q9P2E2 1029 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 TMEFF2Q9UIK5 374 aaPredicted RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 STUB1Q9UNE7 303 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 ING4Q9UNL4 249 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 DIMT1Q9UNQ2 313 aaKnown RBP7.96□□□□□ -1.13
ATG4A-201ENST00000343524 PRELID3BQ9Y3B1 194 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 GPR45Q9Y5Y3 372 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 FKBP7Q9Y680 259 aa7.96□□□□□ -1.13
ATG4A-201ENST00000343524 TMEM150BA6NC51 233 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PCP4L1A6NKN8 68 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ACKR2O00590 384 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PIP5K1BO14986 540 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 MUSKO15146 869 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 MFSD11O43934 449 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 SEC22BO75396 215 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ATP6AP2O75787 350 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 LCKP06239 509 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 LIPAP38571 399 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 SOX9P48436 509 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 TPMTP51580 245 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 SPP2Q13103 211 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PRKG2Q13237 762 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 KCNC3Q14003 757 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 GPR19Q15760 415 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 AANATQ16613 207 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PKDCCQ504Y2 493 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PCID2Q5JVF3 399 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 LCN1P1Q5VSP4 162 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CACHD1Q5VU97 1274 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 KIAA1614Q5VZ46 1190 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CLEC6AQ6EIG7 209 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 TRNP1Q6NT89 227 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 XRRA1Q6P2D8 792 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 TXNDC11Q6PKC3 985 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 GDPGP1Q6ZNW5 385 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ARHGAP36Q6ZRI8 547 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 AHSA2Q719I0 299 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 C16orf62Q7Z3J2 963 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 METTL3Q86U44 580 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms