RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MSH3P20585 1137 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 SERPINA4P29622 427 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 CDH4P55283 916 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 RPS3AP61247 264 aaKnown RBP11.68□□□□□ -0.54
USP1-201ENST00000339950 USP41Q3LFD5 358 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 PPP4R4Q6NUP7 873 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 Q6ZSR9 355 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 ADHFE1Q8IWW8 467 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 CD200R1Q8TD46 325 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 NODALQ96S42 347 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 RHNO1Q9BSD3 238 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 ACSL6Q9UKU0 697 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 FAM234BA2RU67 622 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 PLK4O00444 970 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 TFECO14948 347 aaPredicted RBP11.68□□□□□ -0.54
USP1-201ENST00000339950 TGFB1P01137 390 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 ALPPL2P10696 532 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 IMPDH2P12268 514 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 TGFBR1P36897 503 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 RPS14P62263 151 aaKnown RBP11.68□□□□□ -0.54
USP1-201ENST00000339950 MXD1Q05195 221 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 TRAP1Q12931 704 aaKnown RBP11.68□□□□□ -0.54
USP1-201ENST00000339950 HIPK1Q86Z02 1210 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 STX19Q8N4C7 294 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 PSKH2Q96QS6 385 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 IKZF5Q9H5V7 419 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 FAM124BQ9H5Z6 455 aaPredicted RBP11.68□□□□□ -0.54
USP1-201ENST00000339950 REEP1Q9H902 201 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 KRT84Q9NSB2 600 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 AIG1Q9NVV5 245 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 TEKT2Q9UIF3 430 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 GNPTGQ9UJJ9 305 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 PADI4Q9UM07 663 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 PHF24Q9UPV7 400 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 OAS3Q9Y6K5 1087 aaKnown RBP11.68□□□□□ -0.54
USP1-201ENST00000339950 TRBV23OR9-2A0A075B6M9 112 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 AQP12BA6NM10 295 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 ZNF197O14709 1029 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 FPGTO14772 594 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 EPN2O95208 641 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 GPIP06744 558 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 GSTM1P09488 218 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 HNF1BP35680 557 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 RNF144AP50876 292 aaPredicted RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 ZBED5Q49AG3 693 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 TTC23Q5W5X9 447 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 LRRC66Q68CR7 880 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.67□□□□□ -0.542e-6■■■■□ 19.8
USP1-201ENST00000339950 SPATA19Q7Z5L4 167 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 AQP12AQ8IXF9 295 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 SLC22A17Q8WUG5 538 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 TFAP2CQ92754 450 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 ZNF599Q96NL3 588 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 CITED4Q96RK1 184 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 CHCHD6Q9BRQ6 235 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 BRD9Q9H8M2 597 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 SDR39U1Q9NRG7 319 aaPredicted RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 GPRC5BQ9NZH0 403 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 C3orf18Q9UK00 162 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 CLEC4EQ9ULY5 219 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 DLGAP4Q9Y2H0 992 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 SEC16AO15027 2179 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 SLC22A2O15244 555 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 LZTS3O60299 673 aaPredicted RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 SEC24AO95486 1093 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 IGSF6O95976 241 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 GALTP07902 379 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 HOXD9P28356 352 aaPredicted RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 KIR3DL1P43629 444 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 RFTN1Q14699 578 aaPredicted RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 MED22Q15528 200 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 CCNYL2Q5T2Q4 361 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 GATAD2AQ86YP4 633 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 ZBTB8BQ8NAP8 495 aaPredicted RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 NETO1Q8TDF5 533 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 KLK6Q92876 244 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 KCNN1Q92952 543 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 BORCS5Q969J3 196 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 ZNF597Q96LX8 424 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 DERL2Q9GZP9 239 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 RMND5AQ9H871 391 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 HMX1Q9NP08 348 aaPredicted RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 ERVK-18Q9QC07 812 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 MAGEL2Q9UJ55 1249 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 PLAGL1Q9UM63 463 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 PCDHGA8Q9Y5G5 932 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 TNPO3Q9Y5L0 923 aaKnown RBP11.67□□□□□ -0.54
USP1-201ENST00000339950 GPR45Q9Y5Y3 372 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 K7EPI3 171 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 FXYD1O00168 92 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 ATF6P18850 670 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 MATN1P21941 496 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 ADAM17P78536 824 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 CYP2A13Q16696 494 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 BBS7Q8IWZ6 715 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 COLGALT2Q8IYK4 626 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 PELI3Q8N2H9 469 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 TAMM41Q96BW9 452 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 ARMC5Q96C12 935 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms