RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 H2AFJQ9BTM1 129 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 TRIM54Q9BYV2 358 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 XKR8Q9H6D3 395 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 KCNK4Q9NYG8 393 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 DCDC2Q9UHG0 476 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 CDV3Q9UKY7 258 aaKnown RBP21.53■■□□□ 1.04
SDC3-202ENST00000339394 ICKQ9UPZ9 632 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 OARD1Q9Y530 152 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 B4GAT1O43505 415 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 KDM1AO60341 852 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 CREB1P16220 341 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 CCT5P48643 541 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 TGFBIQ15582 683 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 FRA10AC1Q70Z53 315 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 EXOC3L1Q86VI1 746 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 AMIGO1Q86WK6 493 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 DENND1AQ8TEH3 1009 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 CCDC138Q96M89 665 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 IL17FQ96PD4 163 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 RDH14Q9HBH5 336 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 SENP1Q9P0U3 644 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 RNF112Q9ULX5 631 aa21.52■■□□□ 1.04
SDC3-202ENST00000339394 GOLGA4Q13439 2230 aaKnown RBP21.51■■□□□ 1.03
SDC3-202ENST00000339394 CCDC189A1A4V9 331 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 DYNC1I1O14576 645 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 COPEO14579 308 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 CASC3O15234 703 aaKnown RBP21.51■■□□□ 1.03
SDC3-202ENST00000339394 UBXN7O94888 489 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 GUCA1CO95843 209 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 SLC16A8O95907 504 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 GSTA1P08263 222 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 CSRP1P21291 193 aaKnown RBP21.51■■□□□ 1.03
SDC3-202ENST00000339394 CRHR1P34998 444 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 ACADVLP49748 655 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 RAB28P51157 221 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 AP1S2P56377 157 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 MBOAT1Q6ZNC8 495 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 SPRED1Q7Z699 444 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 GLRX5Q86SX6 157 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 GPSM1Q86YR5 675 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 SMC6Q96SB8 1091 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 ATOH8Q96SQ7 321 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 SRMSQ9H3Y6 488 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 ARL15Q9NXU5 204 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 TMEM216Q9P0N5 145 aa21.51■■□□□ 1.03
SDC3-202ENST00000339394 COL5A1P20908 1838 aaPredicted RBP21.5■■□□□ 1.03
SDC3-202ENST00000339394 IGHV1OR21-1A0A087WYE8 117 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 PABPN1LA6NDY0 278 aaKnown RBP21.5■■□□□ 1.03
SDC3-202ENST00000339394 KERAO60938 352 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 GP1BAP07359 652 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 RBP1P09455 135 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 TYRP1P17643 537 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 EPHA4P54764 986 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 TECRLQ5HYJ1 363 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 NKAIN2Q5VXU1 208 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 BANPQ8N9N5 519 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 SCYL1Q96KG9 808 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 STMN4Q9H169 189 aaPredicted RBP21.5■■□□□ 1.03
SDC3-202ENST00000339394 OR6C2Q9NZP2 312 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 XPR1Q9UBH6 696 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 LNPEPQ9UIQ6 1025 aa21.5■■□□□ 1.03
SDC3-202ENST00000339394 ZW10O43264 779 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 GLRA3O75311 464 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 AMD1P17707 334 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 PKLRP30613 574 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 SHMT2P34897 504 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 GPLD1P80108 840 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 RSPO4Q2I0M5 234 aaPredicted RBP21.49■■□□□ 1.03
SDC3-202ENST00000339394 AMZ1Q400G9 498 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 C16orf46Q6P387 395 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 TMEM151AQ8N4L1 468 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 RAB42Q8N4Z0 105 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 LMNTD1Q8N9Z9 388 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 LINC01555Q8NAE3 123 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 SH3GL2Q99962 352 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 MRPL57Q9BQC6 102 aaKnown RBP21.49■■□□□ 1.03
SDC3-202ENST00000339394 TOR4AQ9NXH8 423 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 SPATA7Q9P0W8 599 aa21.49■■□□□ 1.03
SDC3-202ENST00000339394 CPSF2Q9P2I0 782 aaKnown RBP21.49■■□□□ 1.03
SDC3-202ENST00000339394 OR6C74A6NCV1 312 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 NCF1BA6NI72 391 aaPredicted RBP21.48■■□□□ 1.03
SDC3-202ENST00000339394 NCF1CA8MVU1 366 aaPredicted RBP21.48■■□□□ 1.03
SDC3-202ENST00000339394 ERGP11308 486 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 NCF1P14598 390 aaPredicted RBP21.48■■□□□ 1.03
SDC3-202ENST00000339394 CD1CP29017 333 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 IMPA1P29218 277 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 KPNA2P52292 529 aaKnown RBP21.48■■□□□ 1.03
SDC3-202ENST00000339394 CDKL1Q00532 357 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 N4BP2L1Q5TBK1 243 aaPredicted RBP21.48■■□□□ 1.03
SDC3-202ENST00000339394 OR10G6Q8NH81 332 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 ZNF480Q8WV37 535 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 RSC1A1Q92681 617 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 EXT2Q93063 718 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 ARL8AQ96BM9 186 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 ALKBH8Q96BT7 664 aaKnown RBP21.48■■□□□ 1.03
SDC3-202ENST00000339394 AHCYL2Q96HN2 611 aaKnown RBP21.48■■□□□ 1.03
SDC3-202ENST00000339394 APOPT1Q96IL0 206 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 RAB11FIP5Q9BXF6 653 aa21.48■■□□□ 1.03
SDC3-202ENST00000339394 MRPL46Q9H2W6 279 aaKnown RBP21.48■■□□□ 1.03
SDC3-202ENST00000339394 HRASLS2Q9NWW9 162 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms