RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 C3orf14Q9HBI5 128 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 CXXC1Q9P0U4 656 aaPredicted RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 POMPQ9Y244 141 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 RIPK3Q9Y572 518 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 MEGF6O75095 1541 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 ZNF705EA8MWA4 302 aaPredicted RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 MAGEB17A8MXT2 336 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 E2F3O00716 465 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 CDRT1O95170 752 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 BCHEP06276 602 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 GKP32189 559 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 BDKRB1P46663 353 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 RORCP51449 518 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 CRELD2Q6UXH1 353 aaPredicted RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 FAM92BQ6ZTR7 304 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 PIWIL4Q7Z3Z4 852 aaKnown RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 FSTL5Q8N475 847 aaPredicted RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 PLD5Q8N7P1 536 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 ARL14EPQ8N8R7 260 aaPredicted RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 SLC37A3Q8NCC5 494 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 GALNT6Q8NCL4 622 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 NFKBIDQ8NI38 313 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 MSANTD3Q96H12 275 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 MGME1Q9BQP7 344 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 ZNF670Q9BS34 389 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 ZDHHC2Q9UIJ5 367 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 TMEM5Q9Y2B1 443 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 COL5A2P05997 1499 aaPredicted RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 TRIM64CA6NLI5 447 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 APEHP13798 732 aaKnown RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 SCNN1AP37088 669 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 AP1S2P56377 157 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 TXNDC11Q6PKC3 985 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 ZNF548Q8NEK5 533 aaPredicted RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 OR6C4Q8NGE1 309 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 TEFMQ96QE5 360 aaKnown RBP12.42□□□□□ -0.42
USP38-201ENST00000307017 TM9SF2Q99805 663 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 KCNN2Q9H2S1 579 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 TMEM27Q9HBJ8 222 aa12.42□□□□□ -0.42
USP38-201ENST00000307017 BOLA2-SMG1P6H3BVE0 249 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 PPP1R11O60927 126 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 AMPD2Q01433 879 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 BICRALQ6AI39 1079 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 SLC7A6OSQ96CW6 309 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 OR52B2Q96RD2 323 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 SMG9Q9H0W8 520 aaKnown RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 KIAA1210Q9ULL0 1709 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 CDC123O75794 336 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 KLK1P06870 262 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 VAMP1P23763 118 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 BATFQ16520 125 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 CAPN13Q6MZZ7 669 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 CYP2U1Q7Z449 544 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 HID1Q8IV36 788 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 ERMAPQ96PL5 475 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 PTGDR2Q9Y5Y4 395 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 WASH3PC4AMC7 463 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 SLC33A1O00400 549 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 NIPSNAP2O75323 286 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 CDK14O94921 469 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 CXCR2P25025 360 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 MEF2AQ02078 507 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 SLC25A52Q3SY17 297 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 RBM48Q5RL73 367 aaKnown RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 TMEM192Q8IY95 271 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 PIK3R3Q92569 461 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 PREBQ9HCU5 417 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 DNAJC27Q9NZQ0 273 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 PRICKLE3O43900 615 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 GTF2BQ00403 316 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 RIN1Q13671 783 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 UBE2UQ5VVX9 321 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 CES5AQ6NT32 575 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 SLC26A9Q7LBE3 791 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 YTHDF3Q7Z739 585 aaKnown RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 PHF13Q86YI8 300 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 MARCH9Q86YJ5 346 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 CMTR2Q8IYT2 770 aaKnown RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 OR5T2Q8NGG2 359 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 GBA3Q9H227 469 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 MGAT4AQ9UM21 535 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 C1QTNF3-AMACRE9PGA6 284 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 RPS17P08708 135 aaKnown RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 PYHIN1Q6K0P9 492 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 KANSL1Q7Z3B3 1105 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 HOPXQ9BPY8 73 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 AIFM2Q9BRQ8 373 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 ZNF225Q9UK10 706 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 JUNP05412 331 aaKnown RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 NUDT17P0C025 328 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 NFKB2Q00653 900 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 PROKR2Q8NFJ6 384 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 ZNF558Q96NG5 402 aa12.41□□□□□ -0.42
USP38-201ENST00000307017 HMX1Q9NP08 348 aaPredicted RBP12.41□□□□□ -0.42
USP38-201ENST00000307017 ELOA3DA6NLF2 546 aaPredicted RBP12.4□□□□□ -0.42
USP38-201ENST00000307017 ATG13O75143 517 aa12.4□□□□□ -0.42
USP38-201ENST00000307017 IFNW1P05000 195 aa12.4□□□□□ -0.42
USP38-201ENST00000307017 COL6A2P12110 1019 aa12.4□□□□□ -0.42
USP38-201ENST00000307017 CDKN2BP42772 138 aa12.4□□□□□ -0.42
USP38-201ENST00000307017 AFF1P51825 1210 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms