RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 HTTP42858 3142 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 CCDC154A6NI56 674 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 CST1P01037 141 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 CD36P16671 472 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 FSHRP23945 695 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 CD83Q01151 205 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 AQP6Q13520 282 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 PAFAH1B3Q15102 231 aaKnown RBP10.69□□□□□ -0.7
LSM3-201ENST00000306024 ZNF404Q494X3 552 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 MPPE1Q53F39 396 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 TPRG1LQ5T0D9 272 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 AGAP9Q5VTM2 703 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 OTUD1Q5VV17 481 aaPredicted RBP10.69□□□□□ -0.7
LSM3-201ENST00000306024 GAREM2Q75VX8 874 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 EID3Q8N140 333 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 EFHBQ8N7U6 833 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 TMBIM1Q969X1 311 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 CCDC126Q96EE4 140 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 PHOX2BQ99453 314 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 IL22Q9GZX6 179 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 PAK1IP1Q9NWT1 392 aaPredicted RBP10.69□□□□□ -0.7
LSM3-201ENST00000306024 PCDHGA8Q9Y5G5 932 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 H0YAE9 185 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 LEFTY2O00292 366 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 ZBTB24O43167 697 aaPredicted RBP10.69□□□□□ -0.7
LSM3-201ENST00000306024 RECQL5O94762 991 aaPredicted RBP10.69□□□□□ -0.7
LSM3-201ENST00000306024 GSRP00390 522 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 PRKACAP17612 351 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 SLC26A3P40879 764 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 PPP2R2BQ00005 443 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 SEMA5AQ13591 1074 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 PARP15Q460N3 678 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 ERAP2Q6P179 960 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 SYCE2Q6PIF2 218 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 RPS27LQ71UM5 84 aaKnown RBP10.69□□□□□ -0.7
LSM3-201ENST00000306024 EPHX4Q8IUS5 362 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 SLC38A6Q8IZM9 456 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 ZNF567Q8N184 647 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 TOR1AIP2Q8NFQ8 470 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 OR5H6Q8NGV6 325 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 C1orf74Q96LT6 269 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 MYRFLQ96LU7 910 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 THUMPD3Q9BV44 507 aaKnown RBP10.69□□□□□ -0.7
LSM3-201ENST00000306024 TM6SF2Q9BZW4 377 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 BRWD1Q9NSI6 2320 aa10.69□□□□□ -0.7
LSM3-201ENST00000306024 FAM95CA0A1B0GW59 222 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 BBIP1A8MTZ0 92 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 ZNF487B1APH4 448 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 DCLK1O15075 740 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 AIREO43918 545 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 UGT2B11O75310 529 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 SERPINF2P08697 491 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 ZNF37AP17032 561 aaPredicted RBP10.68□□□□□ -0.7
LSM3-201ENST00000306024 CHRM3P20309 590 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 AZGP1P25311 298 aaKnown RBP10.68□□□□□ -0.7
LSM3-201ENST00000306024 GABRB3P28472 473 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 FMO3P31513 532 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 SHMT2P34897 504 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 MAPKAPK2P49137 400 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 CDH13P55290 713 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 P2RX3P56373 397 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 IFITM2Q01629 132 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 NIPAL4Q0D2K0 466 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 SIM2Q14190 667 aaPredicted RBP10.68□□□□□ -0.7
LSM3-201ENST00000306024 CCDC85BQ15834 202 aaPredicted RBP10.68□□□□□ -0.7
LSM3-201ENST00000306024 ZNF181Q2M3W8 571 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 AGAP6Q5VW22 663 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 GLYATQ6IB77 296 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 ZNF517Q6ZMY9 492 aaPredicted RBP10.68□□□□□ -0.7
LSM3-201ENST00000306024 SETD9Q8NE22 299 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 OR6P1Q8NGX9 317 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 AGAP4Q96P64 663 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 PPP1R2P1Q96PQ5 205 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 MKRN2Q9H000 416 aaKnown RBP10.68□□□□□ -0.7
LSM3-201ENST00000306024 SFXN1Q9H9B4 322 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 SMURF2Q9HAU4 748 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 MEN1O00255 615 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 NME4O00746 187 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 STX7O15400 261 aaKnown RBP10.68□□□□□ -0.7
LSM3-201ENST00000306024 VNN2O95498 520 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 MAP2K4P45985 399 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 GSK3BP49841 420 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 CREB5Q02930 508 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 CTBP1Q13363 440 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 TAB1Q15750 504 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 CERCAMQ5T4B2 595 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 LINGO4Q6UY18 593 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 BBS7Q8IWZ6 715 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 CMTM8Q8IZV2 173 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 NPWQ8N729 165 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 RHOXF1Q8NHV9 184 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 SGCDQ92629 289 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 SEMA3CQ99985 751 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 SLC7A5P2Q9GIP4 190 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 AKIP1Q9NQ31 210 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 VPS4AQ9UN37 437 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 WNT6Q9Y6F9 365 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 OR6C70A6NIJ9 312 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 E5RI56 91 aa10.68□□□□□ -0.7
LSM3-201ENST00000306024 CPNE6O95741 557 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms