RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 LARP4Q71RC2 724 aaKnown RBP eCLIP13.03□□□□□ -0.325e-6■■■■■ 32.5
CASC4-201ENST00000299957 SLC22A16Q86VW1 577 aa13.03□□□□□ -0.32
CASC4-201ENST00000299957 LHPPQ9H008 270 aa13.03□□□□□ -0.32
CASC4-201ENST00000299957 ZDHHC4Q9NPG8 344 aa13.03□□□□□ -0.32
CASC4-201ENST00000299957 EQTNQ9NQ60 294 aa13.03□□□□□ -0.32
CASC4-201ENST00000299957 ZNF99A8MXY4 864 aaPredicted RBP13.02□□□□□ -0.32
CASC4-201ENST00000299957 EFCAB9A8MZ26 197 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 FAM25AB3EWG3 89 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 FAM25CB3EWG5 89 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 FAM25GB3EWG6 89 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 ACOT8O14734 319 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 SOX14O95416 240 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 FABP3P05413 133 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 OGNP20774 298 aaKnown RBP13.02□□□□□ -0.32
CASC4-201ENST00000299957 STK19P49842 368 aaPredicted RBP13.02□□□□□ -0.32
CASC4-201ENST00000299957 ALDH3A2P51648 485 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 SCAPQ12770 1279 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 NHSL2Q5HYW2 709 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 CYP2U1Q7Z449 544 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 BBS7Q8IWZ6 715 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 ADGRG5Q8IZF4 528 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 FNDC8Q8TC99 324 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 EGLN2Q96KS0 407 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 TMEM245Q9H330 911 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 KLHL1Q9NR64 748 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 CLCA2Q9UQC9 943 aa13.02□□□□□ -0.32
CASC4-201ENST00000299957 HNRNPCL2B2RXH8 293 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 H3BMQ9 156 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 EEFSECP57772 596 aaKnown RBP13.02□□□□□ -0.33
CASC4-201ENST00000299957 GRB14Q14449 540 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 ZNF57Q68EA5 555 aaPredicted RBP13.02□□□□□ -0.33
CASC4-201ENST00000299957 KCTD11Q693B1 232 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 CMTM8Q8IZV2 173 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 TOP1MTQ969P6 601 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 COG8Q96MW5 612 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 DEPDC7Q96QD5 511 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 C1QTNF1Q9BXJ1 281 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 TLR9Q9NR96 1032 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 RPS6KA6Q9UK32 745 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 PCDHB8Q9UN66 801 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 NINQ8N4C6 2090 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 FAM220BPB1ANY3 271 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 CCNKO75909 580 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 ACADVLP49748 655 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 CNTN1Q12860 1018 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 CRHR2Q13324 411 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 VN1R5Q7Z5H4 357 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 MAL2Q969L2 176 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 PKP4Q99569 1192 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 FUNDC2Q9BWH2 189 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 RHBGQ9H310 441 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 CD320Q9NPF0 282 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 DNMT3AQ9Y6K1 912 aaPredicted RBP13.02□□□□□ -0.33
CASC4-201ENST00000299957 PMF1-BGLAPU3KQ54 211 aa13.02□□□□□ -0.33
CASC4-201ENST00000299957 TRBV23OR9-2A0A075B6M9 112 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 HAS3O00219 553 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 WASP42768 502 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 SNRPD1P62314 119 aaKnown RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 CD47Q08722 323 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 RFTN1Q14699 578 aaPredicted RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 SMN1Q16637 294 aaKnown RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 C6orf141Q5SZD1 244 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 ADGRG2Q8IZP9 1017 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 TFAP2CQ92754 450 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 ABCB8Q9NUT2 735 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 NUDT4Q9NZJ9 180 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 GABRQQ9UN88 632 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 ASF1AQ9Y294 204 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 SHROOM3Q8TF72 1996 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 MAGEB17A8MXT2 336 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 MYL12BO14950 172 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 CLPXO76031 633 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 HOXD10P28358 340 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 CCND3P30281 292 aaPredicted RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 PREPP48147 710 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 SRP54P61011 504 aaKnown RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 C2orf80Q0P641 193 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 ZNF829Q3KNS6 432 aaPredicted RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 EIF3MQ7L2H7 374 aaKnown RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 C1GALT1C1Q96EU7 318 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 HDHD2Q9H0R4 259 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 KLHL3Q9UH77 587 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 SAMD4AQ9UPU9 718 aaKnown RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 CENPFP49454 3210 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 ARAP2Q8WZ64 1704 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 FAM186AA6NE01 2351 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 PRAMEF11O60813 436 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 SBK3P0C264 359 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 CDH4P55283 916 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 COPZ1P61923 177 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 NFATC3Q12968 1075 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 MRPL28Q13084 256 aaKnown RBP13.01□□□□□ -0.33
CASC4-201ENST00000299957 USP41Q3LFD5 358 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 MAMDC4Q6UXC1 1216 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 FAM217AQ8IXS0 508 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 CFAP206Q8IYR0 622 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 PIH1D2Q8WWB5 315 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 YIPF4Q9BSR8 244 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 CNPPD1Q9BV87 410 aa13.01□□□□□ -0.33
CASC4-201ENST00000299957 DNAJC11Q9NVH1 559 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms