RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 MRPL19P49406 292 aaKnown RBP13.9□□□□□ -0.18
C9orf3-202ENST00000297979 CCR3P51677 355 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 CDK3Q00526 305 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 ABRAXAS2Q15018 415 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 MMEL1Q495T6 779 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 C10orf62Q5T681 223 aaPredicted RBP13.9□□□□□ -0.18
C9orf3-202ENST00000297979 C1orf146Q5VVC0 180 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 REP15Q6BDI9 236 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 RIPOR1Q6ZS17 1223 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 CFAP206Q8IYR0 622 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 C8orf33Q9H7E9 229 aaPredicted RBP13.9□□□□□ -0.18
C9orf3-202ENST00000297979 ACTR8Q9H981 624 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 WDR41Q9HAD4 459 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 DNAJC11Q9NVH1 559 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 FBXL12Q9NXK8 326 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 KLQ9UEF7 1012 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 GPR45Q9Y5Y3 372 aa13.9□□□□□ -0.18
C9orf3-202ENST00000297979 FFAR3O14843 346 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 GPR42O15529 346 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 CLDN9O95484 217 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 DNTTP04053 509 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 DRD1P21728 446 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 BDKRB1P46663 353 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 DIO3P55073 304 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 NME5P56597 212 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 GRSF1Q12849 480 aaKnown RBP eCLIP13.89□□□□□ -0.19
C9orf3-202ENST00000297979 C6orf136Q5SQH8 315 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 BNC2Q6ZN30 1099 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-202ENST00000297979 TRMT11Q7Z4G4 463 aaKnown RBP13.89□□□□□ -0.19
C9orf3-202ENST00000297979 FUNDC1Q8IVP5 155 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 FBXW8Q8N3Y1 598 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 SFRP1Q8N474 314 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 FNDC5Q8NAU1 212 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 ATL1Q8WXF7 558 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 PYCR2Q96C36 320 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 CCDC138Q96M89 665 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 HBEGFQ99075 208 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 TRPM6Q9BX84 2022 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 ATG2BQ96BY7 2078 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 XIRP2A4UGR9 3374 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 FBP2O00757 339 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 POP7O75817 140 aaKnown RBP13.89□□□□□ -0.19
C9orf3-202ENST00000297979 PLOD1Q02809 727 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-202ENST00000297979 SFSWAPQ12872 951 aaKnown RBP13.89□□□□□ -0.19
C9orf3-202ENST00000297979 GRIK2Q13002 908 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 NR6A1Q15406 480 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 OR2L2Q8NH16 312 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 HM13Q8TCT9 377 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 FOXJ1Q92949 421 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 FAM131CQ96AQ9 280 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 ATG10Q9H0Y0 220 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 SLC22A14Q9Y267 594 aa13.89□□□□□ -0.19
C9orf3-202ENST00000297979 A0A1W2PQF6 199 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 BBIP1A8MTZ0 92 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 PLRG1O43660 514 aaKnown RBP13.88□□□□□ -0.19
C9orf3-202ENST00000297979 COL9A1P20849 921 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 ITPKAP23677 461 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 MTTPP55157 894 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 ACTR3P61158 418 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 LRIT3Q3SXY7 679 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 GGTA1PQ4G0N0 100 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 NEK5Q6P3R8 708 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 DOK6Q6PKX4 331 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 DNASE1L2Q92874 299 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 STMN2Q93045 179 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 SERPINI1Q99574 410 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 C1orf50Q9BV19 199 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 BRINP2Q9C0B6 783 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 KCNK12Q9HB15 430 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 ZFR2Q9UPR6 939 aaKnown RBP13.88□□□□□ -0.19
C9orf3-202ENST00000297979 MGAT4DA6NG13 374 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 SLC28A1O00337 649 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 MANBAO00462 879 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 NR5A2O00482 541 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 MRASO14807 208 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 CHUKO15111 745 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 LSM1O15116 133 aaKnown RBP13.88□□□□□ -0.19
C9orf3-202ENST00000297979 NRP2O60462 931 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 ULK1O75385 1050 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 PFN3P60673 137 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 RPS21P63220 83 aaKnown RBP13.88□□□□□ -0.19
C9orf3-202ENST00000297979 PLA2G4EQ3MJ16 856 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 XKR5Q6UX68 686 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 SLC44A3Q8N4M1 653 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 ENDOVQ8N8Q3 282 aaKnown RBP13.88□□□□□ -0.19
C9orf3-202ENST00000297979 OR14C36Q8NHC7 312 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 PPP3R2Q96LZ3 170 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 SLC6A17Q9H1V8 727 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 DCLRE1BQ9H816 532 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 STOX2Q9P2F5 926 aaPredicted RBP13.88□□□□□ -0.19
C9orf3-202ENST00000297979 LIMD1Q9UGP4 676 aa13.88□□□□□ -0.19
C9orf3-202ENST00000297979 RGS14O43566 566 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 KRT6AP02538 564 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 KRT6BP04259 564 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 TEAD1P28347 426 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 KRT6CP48668 564 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 CLCN2P51788 898 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 LRP8Q14114 963 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 FGL2Q14314 439 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 IRF4Q15306 451 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms