RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ABCG8Q9H221 673 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 CRADDP78560 199 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TMEM164Q5U3C3 297 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 STRADAQ7RTN6 431 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 VTCN1Q7Z7D3 282 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 NXPE1Q8N323 547 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 PIWIL1Q96J94 861 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 ZNF521Q96K83 1311 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 AURKAO14965 403 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 RORAP35398 523 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 AUHQ13825 339 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 ZSCAN1Q8NBB4 408 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TWIST2Q8WVJ9 160 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 AGPSO00116 658 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 GNRHRP30968 328 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 NKX6-1P78426 367 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 FAM129CQ86XR2 697 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 FAM205CA6NFA0 338 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 FAM86B1E9PN63 330 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 PRPS2P11908 318 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 CD47Q08722 323 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 GTF2H2Q13888 395 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 HECTD2Q5U5R9 776 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 LRRC66Q68CR7 880 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 GTF2H2CQ6P1K8 395 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 ZDHHC21Q8IVQ6 265 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 Q8N402 240 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TMEM199Q8N511 208 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 ERLEC1Q96DZ1 483 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 ACKR2O00590 384 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 LIASO43766 372 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 BLKP51451 505 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TSSK3Q96PN8 268 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 MALT1Q9UDY8 824 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 A8MXE2 369 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TMEM150CB9EJG8 249 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 RBMXP38159 391 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 CRISP3P54108 245 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC20A2Q08357 652 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 CRHR2Q13324 411 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 PARP15Q460N3 678 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 DCST2Q5T1A1 773 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 GSTCDQ8NEC7 633 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 STYXQ8WUJ0 223 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 KLHL6Q8WZ60 621 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 PMEPA1Q969W9 287 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 MAPKAP1Q9BPZ7 522 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 PLA2G12BQ9BX93 195 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TMEM39BQ9GZU3 492 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 RAB9BQ9NP90 201 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TNFRSF10DQ9UBN6 386 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 USP20Q9Y2K6 914 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 C1orf196B1AJZ1 125 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 RALGPS2Q86X27 583 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 SENP8Q96LD8 212 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 RNF38Q9H0F5 515 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 STMND1H3BQB6 276 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 MSCO60682 206 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 SEMA5AQ13591 1074 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 PLA2G4EQ3MJ16 856 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 S100A7AQ86SG5 101 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 RAB11FIP5Q9BXF6 653 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 CPS1P31327 1500 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 TSPAN15O95858 294 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 AGTR1P30556 359 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 RRAS2P62070 204 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 DDR1Q08345 913 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 ZACNQ401N2 412 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 REPS2Q8NFH8 660 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 LRRC58Q96CX6 371 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 ULBP1Q9BZM6 244 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 PDGFDQ9GZP0 370 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 RPP40O75818 363 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 C8GP07360 202 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 CACNG1Q06432 222 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 DSG2Q14126 1118 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 PPP1R26Q5T8A7 1209 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 VASH1Q7L8A9 365 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 ANKRD52Q8NB46 1076 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 APOLD1Q96LR9 279 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 GLYATL1P3A0A0U1RQE8 302 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 LILRB5O75023 590 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 H6PDO95479 791 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 ZNF267Q14586 743 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 PITRM1Q5JRX3 1037 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 REP15Q6BDI9 236 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 STYK1Q6J9G0 422 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 ERVW-1Q9UQF0 538 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 CDH10Q9Y6N8 788 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 NINQ8N4C6 2090 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 C2orf72A6NCS6 295 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 GLRA2P23416 452 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 KCNJ5P48544 419 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 ECH1Q13011 328 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 MADCAM1Q13477 382 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 CRB2Q5IJ48 1285 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 SIRT2Q8IXJ6 389 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 GPR151Q8TDV0 419 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 C17orf113A0A1B0GUU1 675 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 IRF2P14316 349 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms