RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PALMDQ9NP74 551 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 BAG5Q9UL15 447 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 TRBV5-3A0A0A0MS03 114 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 TRBV5-4A0A0C4DH59 114 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 CLPXO76031 633 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 CLDN9O95484 217 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 HOXB6P17509 224 aaKnown RBP18.29■□□□□ 0.52
CPSF3-201ENST00000238112 PRKACGP22612 351 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 RPS14P62263 151 aaKnown RBP18.29■□□□□ 0.52
CPSF3-201ENST00000238112 CPSF6Q16630 551 aaKnown RBP eCLIP18.29■□□□□ 0.52
CPSF3-201ENST00000238112 RBM23Q86U06 439 aaKnown RBP18.29■□□□□ 0.52
CPSF3-201ENST00000238112 DCAF4L2Q8NA75 395 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 NETO1Q8TDF5 533 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 BHMTQ93088 406 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 KCNH6Q9H252 994 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 SLC6A13Q9NSD5 602 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 OR51B4Q9Y5P0 310 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 U3KQV3 271 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 BRCA2P51587 3418 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 NBNO60934 754 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 SEC24AO95486 1093 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 ANXA5P08758 320 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 HTR1AP08908 422 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 BPIP17213 487 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 AGXTP21549 392 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 S100A3P33764 101 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 RAD23AP54725 363 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 SMAD3P84022 425 aaKnown RBP18.29■□□□□ 0.52
CPSF3-201ENST00000238112 CHRNA6Q15825 494 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 RFX4Q33E94 735 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 GALNT18Q6P9A2 607 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 DET1Q7L5Y6 550 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 TMEM179BQ7Z7N9 219 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 HIPK1Q86Z02 1210 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 ARL10Q8N8L6 244 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 CPPED1Q9BRF8 314 aaPredicted RBP18.29■□□□□ 0.52
CPSF3-201ENST00000238112 ACPTQ9BZG2 426 aa18.29■□□□□ 0.52
CPSF3-201ENST00000238112 A0A096LPI6 279 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.28■□□□□ 0.52
CPSF3-201ENST00000238112 SLC1A7O00341 560 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 AREL1O15033 823 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 HOXA2O43364 376 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 HNF1BP35680 557 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 SPAM1P38567 509 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 PIGFQ07326 219 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 ZNF691Q5VV52 312 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 CALHM3Q86XJ0 350 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 TRUB1Q8WWH5 349 aaKnown RBP18.28■□□□□ 0.52
CPSF3-201ENST00000238112 ITCHQ96J02 903 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 NODALQ96S42 347 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 CSF3RQ99062 836 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 FUNDC2Q9BWH2 189 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 STARD7Q9NQZ5 370 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 STOML2Q9UJZ1 356 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 PTGES3LE9PB15 166 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 J3QRK9 145 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 ARVCFO00192 962 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 PER2O15055 1255 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 PDYNP01213 254 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 OCM2P0CE71 109 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 OCMP0CE72 109 aaPredicted RBP18.28■□□□□ 0.52
CPSF3-201ENST00000238112 ISL1P61371 349 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 GPR33Q49SQ1 333 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 LRIF1Q5T3J3 769 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 KIAA1841Q6NSI8 718 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 RETSATQ6NUM9 610 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 CRTC3Q6UUV7 619 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 SLC15A4Q8N697 577 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 FRS2Q8WU20 508 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 SELENOMQ8WWX9 145 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 MUL1Q969V5 352 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 FBXL8Q96CD0 374 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 PYURFQ96I23 114 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 FAM210AQ96ND0 272 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 CCDC90BQ9GZT6 254 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 ARL15Q9NXU5 204 aa18.28■□□□□ 0.52
CPSF3-201ENST00000238112 AFF4Q9UHB7 1163 aaKnown RBP18.28■□□□□ 0.52
CPSF3-201ENST00000238112 THSD7BQ9C0I4 1608 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 A8MX80 341 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 CFAP99D6REC4 459 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 BCKDKO14874 412 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 ARHGEF15O94989 841 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 GSNP06396 782 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 BMP1P13497 986 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 IL1RNP18510 177 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 GKP32189 559 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 CLDN8P56748 225 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 IL18R1Q13478 541 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 NR1D2Q14995 579 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 GRAMD4Q6IC98 578 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 DCDC5Q6ZRR9 648 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 ANKRD46Q86W74 232 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 NXPE1Q8N323 547 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 WFDC5Q8TCV5 224 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 C19orf43Q9BQ61 176 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 C2orf49Q9BVC5 232 aaPredicted RBP18.27■□□□□ 0.52
CPSF3-201ENST00000238112 SLC32A1Q9H598 525 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 KCTD5Q9NXV2 234 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 MAN2B2Q9Y2E5 1009 aa18.27■□□□□ 0.52
CPSF3-201ENST00000238112 DLGAP4Q9Y2H0 992 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms